Aphelocoma coerulescens (scrub jay): 138112236
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Entry
138112236 CDS
T10543
Name
(RefSeq) nucleolar RNA helicase 2-like isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoe03009
]
138112236
03036 Chromosome and associated proteins [BR:
acoe03036
]
138112236
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138112236
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
Pre-60S particles
Helicases
138112236
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
138112236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
BHD_2
Motif
Other DBs
NCBI-GeneID:
138112236
NCBI-ProteinID:
XP_068875084
LinkDB
All DBs
Position
6:complement(4753318..4764929)
Genome browser
AA seq
787 aa
AA seq
DB search
MGAVWGRAARLGLPAVRAAAAPASGGGRRLGWLGGAGAGPSVLLSAALPYGPARLPHFLR
AGAGRASWGRRAETGPDTGSSAAAAYLPGEHPAAMPAAEPEHSPAEPQAPAAAESVRRGR
RRKVKQEETPEKKVKRQVKAKRRGKAEAEQAQPEESGLGDGDFEPPVPKKTKKIKEKSNG
LVGESDASQHAVESSSVVSDSVTSPAAGEQDSDAEELTEEAKEGAFSNFPLSQNTINLLT
ARGVKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTLSFALPLIEKLQSVSQDGRRGRAPK
VLVLVPTRELATQVAKDFKNLTRKLSIACFYGGTPYKEQLDLLKSGIDILVGTPGRIKDH
IQNSKLELSCVKHVVLDEVDHMLDMGFAEQVEEILGSSYKKGSENNPQTLLFSATCPRWV
YDVAKKYMRDEYEQIDLIGRKTQRTATTVEHLAIQCRSSQRAGVLGDIIQVYSGSRGRTI
VFCETKREANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLD
IPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICLFQRREEDLLKQVEHKAGITFKR
VGVPSATDVIKASSNDAKKLLEAVPPSAVDYFRKSAEELIDEKGAVAALAAALAHISGAA
HIQQRSLLNSTAGFVTMVLKCSIEMHTMGYAWRGLKEQLGEEVDNKVSAMRFLKGKMGVC
FDIPVDELSNIQEQWKDTRRWQLSVASELPELEEYPQEAGRGFSKFGNSRQGDFKRKSWF
KSGNRGL
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgggggccgtgtggggccgggcagcgcggctgggactccctgcggtgcgggcggcggcg
gccccggcgagcggcggcgggcgtcggttgggctggctgggcggcgccggggcgggcccg
tcggtgctgctgtcggcagcgctgccctacggaccggcccgcctgcctcacttcctgcgc
gccggggcggggcgcgcgtcctggggccgccgcgccgagaccggccccgacactggcagc
agcgccgccgccgcgtaccttcccggggagcatccggcagccatgcccgccgccgagccc
gagcacagccccgccgagccccaggcgccggccgccgcagagtcggtgcgccgcggacgc
cgcagaaaggtcaagcaggaggagacgccggagaagaaggtgaagcggcaggtgaaagcg
aagcggcgcggtaaggccgaggccgagcaggcgcagcccgaggagagcgggctgggggac
ggcgatttcgagccccccgtgcccaagaagacgaaaaagatcaaggagaagagcaacggt
ttggtaggagagagcgacgcgtcccagcatgcggtggaatcttcctccgttgtgagcgac
agcgtgacatccccagctgccggagagcaggacagcgacgccgaggagttgacagaagaa
gcaaaagaaggcgccttctctaattttccactctcacagaacactatcaaccttctcaca
gctcgaggtgtaaaatacctgttccctgtgcaagtgaagactttccagcccatatatgat
ggcaaagatgtaattgctcaagctcgaacaggaactgggaaaaccctttcttttgctctt
ccactgattgaaaaacttcagagtgtctcgcaggatgggagaagaggccgtgcaccaaaa
gtgctggttcttgttccaaccagggaactggccactcaggtagccaaagacttcaagaat
ctcacaaggaaactgtcaattgcttgtttttatggaggaactccgtataaagaacagctt
gatctccttaaaagtggcatcgatattctagtgggaactcctggacggatcaaagaccac
attcagaatagcaagctggaactttcctgtgtgaagcatgttgttttggatgaagtggat
cacatgttagacatgggctttgcagaacaagtggaagaaatcttgggatcgtcctataag
aaaggctctgagaacaacccgcagacactgctgttttctgcaacttgtccacgctgggtt
tatgatgtagcaaaaaaatacatgagagatgagtacgaacagattgacctgattggaagg
aagactcaaaggacagccacaactgtggaacacttggctatacagtgtcgctcatctcag
agagcaggagttcttggggacatcattcaggtctacagtggcagccgtgggcgaaccatt
gtcttttgtgagaccaaaagggaagcaaatgagttggcaatgaatgcttcactcaaacag
gatgcccagtccttgcatggtgacattccacagaaacagagggaaattacattaaaaggc
ttcagaaatggtgtgtttgaggttctgattgcaacaaatgtagctgcccgtggtttggat
attcccgaggttgaccttgttatacagtgctcaccaccaaaagatgttgattcctacatc
caccgttctggacgcacgggccgagctggccgaactggtatctgcatttgtttgtttcag
agaagagaagaagatcttctgaaacaagtcgagcacaaagcaggtattacctttaagcgt
gtaggcgttccttctgctacagatgtaattaaagcttcaagtaatgatgccaaaaagttg
ctggaggctgttcctccgtctgcagtagactacttcagaaaatcagctgaagagctgata
gatgaaaagggggcggtggctgccctggctgcagccctggcgcacatttccggggcagct
cacatccagcagcgctccctgctcaactcaacagctggttttgtgaccatggtgttgaag
tgttcgatagagatgcataccatgggctatgcctggcggggactgaaggaacagcttggg
gaggaagtcgataacaaggtgtctgcaatgcgtttcctcaaggggaagatgggcgtgtgc
tttgatatccctgttgacgaactgagtaacatacaggagcagtggaaggacacacggcgc
tggcagctgtcggtggcaagtgagttgcccgagctggaagaatatccccaggaggcggga
cgagggttctccaagttcggaaacagcaggcaaggagacttcaagagaaaaagctggttc
aagagtggaaatcggggactttaa
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