Aphelocoma coerulescens (scrub jay): 138112548
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Entry
138112548 CDS
T10543
Symbol
MMS19
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
KO
K15075
DNA repair/transcription protein MET18/MMS19
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
acoe03036
]
138112548 (MMS19)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138112548 (MMS19)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
138112548 (MMS19)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
138112548 (MMS19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS19_C
MMS19_N
TOR1L1_N
HEAT_ECM29
RIX1
Motif
Other DBs
NCBI-GeneID:
138112548
NCBI-ProteinID:
XP_068875937
LinkDB
All DBs
Position
6:22889831..22904964
Genome browser
AA seq
1026 aa
AA seq
DB search
MAAAGAGPGAGVEALAASVLDFVSGQQDGRGAEVAAGVKDGRWTVLQLVEALGFCLENTD
PRMRGRGIQLLSQVLLQCYSLLQEKEVLHLVLFYESRLQDHHLVIPSVLQGLRALSMCKV
LSPGLAVSVLKAIFQEVHVQSLMQLDRHTVYSIITNFMSTREEELKGLGADFTFGFIQVM
DGEKDPRNLLVAFQIVRDLIAKDYALGPFVEELFEVTSCYFPVDFTPPPNDPHGIQREDL
ILSLRAVLASTPQFAEFLLPLLIEKLDSELQSAKLDSLQTLTACCAIYGQKELQEFLPSL
WSSLRREVFQTASEKIETECLTALHALSACLSRSVLSSDSEDLLDSFLSSILQDCRHHLC
EPDMKLVWPSAKLLQAAAGASLRTYHRITRSVLPLLLEQYTKHTQSSQRRTILEMLLGFL
ELQQKWGHVEEDESTLLSLQAPVCSVVFSALTDPSVQLQLVGIKALTVLGSLQGFLSSSG
LELVVDHLIRLALHEEDSQSSEAAMEAAGSLAPTYPEVFSGRMVPRLEEELQSEREESYH
NHRSLQQRCLQALAAVSTHTSIVRDTVPVLLQHLQKVQKGTEARNTEDMVSVCQSLHRVA
LQCQQDAEGCWYFHQTVVPCLLAMAVQAAMQESTHTLPGKALLEEEVLAAMIPVISAATT
HLSPELAAQSVSHVVPLFLNGEVSFLPQNSFPCSFQPFGDGECLEAQRRLVALLMAFVCS
LPRDVAIPQQEWLLRELLALSCSCNCPFTATTAAKCFAGLVNKHPAGQQLDEILQLAVNR
MEPGLAEGPHRTQALTLLLWVTKALVLRYHPLSSCLTDKLLGLLGDAELGPAAADGFSLL
MAESPDVLHKGCHADVRIMFRQRFFTDNVPKLVQGFHGAGPDVKANYLKGLSHVLNHLPK
PVLVTELPTLLSLLLEALSCSDRVVQLSTLSCLHPLLLEAPQIMSLHVDTLVTKFLNLTS
SPTMAVRIAALRCAHALTSLPTTVLLPYKGRVIRALAKPLDDKKRLVRKEAVAARGEWFL
LGSPGR
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccggggccgggcccggggccggggtggaggctctcgccgcctccgtcctg
gacttcgtgtccgggcagcaggacggccgcggcgcggaggtggcggcaggggtgaaagat
ggaaggtggacagtgctgcagcttgtggaagccctggggttttgcctggagaacacagat
cctcggatgcgagggcgaggcatccagctgttgtcacaagtcctgctccagtgttactcc
ctgctccaggagaaggaagtgctgcatctggtcctgttctatgagagccggctgcaagat
catcacctggtgatcccctcggtgcttcagggactgcgagcgctgagcatgtgcaaggtg
ctgtccccagggctagcagtgtctgtgctcaaagccatcttccaggaggtacatgtgcag
tccttgatgcagctggaccgccacacagtctacagcatcatcaccaacttcatgagcacc
agggaggaagagctgaagggcctgggtgccgacttcaccttcggcttcatccaggtcatg
gatggggagaaggatccccgcaatctgctggtggccttccagattgtgcgtgatcttatt
gccaaggactatgctctgggtccctttgtggaagagctgtttgaagttacatcctgctac
ttccctgttgattttactccaccccccaatgatcctcatggcatccagagggaagacctg
atcctgagcctccgagctgtactggcctccacgccccaatttgctgagttccttctccct
ctgcttattgagaagttggactcagaactgcaaagtgccaagcttgactcgctgcagact
ctgactgcctgctgtgccatctacgggcagaaggagctgcaggaattcctccccagcctc
tggtcgtccctgcgcagagaggtgttccagacagcgagcgagaagattgagacggaatgc
ctgactgcactgcatgctctctctgcctgcctctcccgctctgtgctcagctctgattct
gaggatctgctggattccttcctcagcagcatcctgcaagattgcaggcaccatctgtgc
gagcctgacatgaagctggtgtggcccagtgccaaactcttgcaggcagcagcaggtgcc
tccctccgcacctaccaccgcatcacccgcagtgtcctgcccctgctgctggagcagtac
accaagcacacacagagcagccagaggaggacaatcctggaaatgctgctaggcttcctg
gagttgcagcagaagtggggacatgtggaagaagatgagagcactctgctgtcgctccaa
gccccagtttgctctgtggtgttctcggcgctgacggatcccagcgtacagctgcagctg
gttgggatcaaggcactgactgtcctgggctccctgcaaggcttcctgtcttcctctggt
ctggagctggttgtggatcacctcatccgtctcgctctgcatgaggaggattcccagagc
agcgaagcagcgatggaggcagctgggtccctggcccccacctacccagaggttttctct
ggacgcatggtacccaggcttgaagaggagctgcagtcagagcgggaagagagctaccac
aaccaccgctccttgcagcagcgctgcctgcaggccctggcagctgtgtccacccacacc
agcatcgtgagggatactgtccctgtcctgctgcagcatctccagaaggtgcagaaaggg
accgaggccaggaacacagaagacatggtctctgtgtgccagagcctgcaccgtgtggcc
ctgcagtgccagcaggatgcggagggctgctggtacttccaccagacggtggtgccgtgc
ctgctggccatggctgtgcaggcagccatgcaagagagcacccatacgctgccaggcaag
gcactgctggaggaagaggtgctggctgccatgatcccagtcatcagcgctgccaccaca
cacctgagccctgagctggctgctcagagtgtgtctcatgtggtgcccctctttctgaat
ggagaggtctccttcctaccccaaaacagttttccctgctccttccagcctttcggggat
ggggagtgcttggaggcacagagacgcctggtcgccctcctcatggccttcgtctgctcc
ttgccccgcgatgtggcaatccctcagcaggaatggctgctccgggagctgctggcattg
agctgttcctgcaactgtcccttcacagccaccacagctgccaagtgctttgcaggactg
gtgaacaaacacccagcagggcagcagctggatgaaatcctgcagcttgcagtgaacagg
atggagcccggccttgcagaggggccccaccgaacgcaggcgctcaccttgctgctctgg
gtgaccaaagccctggtactgcgctaccaccccctgagctcctgcctgacagacaagctg
ctgggcctgctgggtgacgcagagctgggccccgctgcagccgatggcttctccctgctc
atggccgagtccccggatgtgctgcacaagggctgccatgctgacgtgcgcatcatgttc
cgccagcgcttcttcactgacaatgtccccaagctggtgcaaggcttccatggggctggc
cctgatgtgaaggcaaattacctgaagggcctgtcccatgtactgaaccacctccccaaa
cctgtgctggtgacagagctgcccacgctgctttccctcctgcttgaggccttgtcctgc
tctgatcgtgtagtacagctctccacactgagctgcctccacccactgctgctcgaagct
ccccagatcatgagcctgcatgtcgacacactggtcaccaagttccttaacctcacctcc
agccccaccatggctgtccgcatcgccgccctgcgctgtgcccatgcgctcaccagtctg
cccacaacagtgctgctcccatacaaaggccgagttatcagggcactggccaagcctttg
gatgacaaaaagaggctggtgcggaaggaagcagtggcagcacgtggggaatggttcctg
ctcgggagcccaggcaggtga
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