Aphelocoma coerulescens (scrub jay): 138112553
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Entry
138112553 CDS
T10543
Symbol
RRP12
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoe03009
]
138112553 (RRP12)
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
90S particles
Other 90S particles
138112553 (RRP12)
Pre-60S particles
Other pre-60S particles
138112553 (RRP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
HEAT_GCN1
TOR1L1_N
Motif
Other DBs
NCBI-GeneID:
138112553
NCBI-ProteinID:
XP_068875945
LinkDB
All DBs
Position
6:22917198..22930090
Genome browser
AA seq
1328 aa
AA seq
DB search
MRPSLTAALTQDGGWRRKRKGGAGAAARGTGSSMARSGRLRSGAAAKLKRWRKGHSSDSN
PETRQHRLAARSRFCSRPAEKSNLTVDAVKLHNELQSGSLRLERASDSAQVRMEEDSAEE
AATEKSSGTFLSGLSDCTNITFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKESET
EYFAALMTTLEAVESPESLSAVAYLLNLVLKRVPSPVLIKKFSDASKAFMSIMSSQACSS
STSALRWVLSCLATLLRKQDLAAWSYPITLQVYHGLLSFCVHTKPKVRKAAQYGVCSVLR
GSEFMFGDAAPEHHPAAPSTAKFCVQEIEKAGGAKEATTTLHVLALLRDVLPCFPAAVVK
TCCETLLRVMTLSHVLVTACAMQAFHSLFSAQASVACLPAELNAQIITALYDYVPSTSDL
QPLLTWLSTMERAHINLARLQKDLCWAHLPRLFSAAMNCFLSPHSQVVSAAAQTLQALLS
ECIAPHMEDIGTVSTSAPAPAAHLCKMFRSVEEGLTYRFHAAWDEVLRVLEVFFETCGKQ
CHPIMRKCLQSLCDLRLSPHFPYTAEVDQAVGAAVSTMGPEVLLESVPLQIDGKEETLDF
PRSWLLPVLRDNVQGARLGFFTSYFLPLAAALKSRALEFTQAGKSVEAKIYDTLQWQVWT
LLPGFCTHPTDVLGAFKGLARTLGMAISERPDLRPTVCQALRTLIHKGCETDAERAEVGR
FAKNFLPILFNVYSQPEKDGGTSAQRRSVLDTVRAYLTVTDPQMVCGFLEKASAKLTSLE
SSEFTRLSILDLVVAMAPYADEQSLGSLYRTIQPSLQSKERSMQKKAYRVLEEVCAAPHA
PCQAFVRSHLQDLQAALLDSLKSAASPAKRPRLKCLLHIVKQLSAEHEPFVTALVPEVIL
CTKEVSVGARKNAFMLLVEMGHAFIRFGPTPEEAMQRFLLLIYVGLTGSVTMISCTVLAL
TRLFFEFKDHLEFSVVEQLLQNICLLLASRTRDVVKAALGFLKVTLLLVDTKLLAKHVQT
MLEAVGNLSDDMRRHFRMKLRNLFIKFIRKFGFELVKGLLPAEYHKVLVNIRKAESRSRK
QRALKKAAADMDEEEAPPPQPRGDSMEEILADSEDEEEEEEERQQSKEWRKQARQKGQAW
LKEGEDDEPLNFLDPNVSQRVLATKPGPKRSRGVSHDFQMSEDGRLIIHDEEEEMDDDEA
KGADEEMADVLQDVGLRSKKSQKRRFREEPDDEEAEAGTYSQYRAGGSGIHRQLNKEPAF
GAEYRSKKGKGDVKKKGQLDPYAYIPLNRAKLNRRKRAKMQGQFKGLMKGAQRGAKAGRR
NRLKSQRS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgaggccttccctgaccgctgccctcactcaagatggcggctggcgccggaagcggaaa
gggggcgcgggcgcagccgcacgtggaaccgggtccagcatggcgcggagcgggaggctc
cggtcgggagccgcggctaaactgaagcgctggcggaagggccacagcagcgactccaac
cccgagacccgccagcatcgcctggctgcccgcagccgcttctgcagccggccggcggag
aaaagtaacttgacggtggatgcagtgaagctgcacaatgagctgcagtcggggtccctg
cgtctggagcgggcgagtgacagtgctcaggtccgtatggaggaggacagtgctgaagag
gctgccacagagaagtcttccggcaccttcctgagcgggctgagcgactgcaccaacatc
accttcagcaaggtgcagcgcttctgggaatccaactctgctgctcacaaagagatctgt
gccgtgctggcggctgtgacagaggtgatccgctcccagggcggcaaggagagcgagaca
gagtactttgctgcactgatgaccacgctggaggccgtggagtcccctgagtcactgtct
gctgtcgcatacctgcttaaccttgtcttaaagcgggtcccaagccctgttcttattaaa
aagttctcagatgcctcaaaagcgttcatgagtatcatgtcctcacaggcctgcagcagc
tccacttctgccctgcgatgggtcctctcttgcctggccacgctgctacggaagcaagac
ttggcagcctggagctatcccatcaccctgcaggtctatcatggcttgctgagcttttgt
gttcataccaagcccaaggtgcggaaagcagcgcagtacggcgtgtgctctgtcctgagg
ggcagcgagttcatgtttggtgatgcagcccctgagcatcaccctgcagcaccctccacc
gccaagttctgtgttcaggagattgaaaaagctggaggtgccaaggaagccaccaccacc
ctgcatgtcctcgccctgctgcgggatgtgctgccctgcttccctgcagctgtggtgaaa
acctgctgtgagaccttgctccgagtcatgacactcagccatgtgctggtgacagcgtgt
gccatgcaagccttccacagcctcttcagtgcccaggccagcgtggcctgcctgccagct
gagctcaatgcccagatcatcactgctctctacgactacgtgcccagtacgagtgacctg
cagccactcctgacctggctgtccaccatggagcgggcacacatcaacctggccaggctg
cagaaggacctgtgctgggctcacctgccccggctcttctctgctgccatgaactgcttc
ctctccccacactcccaggtggtgtcggcagcagcgcagactctgcaggcccttctcagt
gagtgcattgctcctcacatggaggacataggcactgtctccacatctgccccagcccct
gctgctcacctgtgcaagatgttcagatcagtggaggaagggctgacataccgtttccat
gcagcgtgggatgaggtgctgcgagtgctggaggtcttcttcgagacatgtgggaagcag
tgccatcccatcatgaggaagtgtctccagtccttgtgtgacctgcggctctccccacac
tttccctacactgctgaagtggaccaggcggtgggggctgctgtgagcaccatgggtcct
gaggtgctgctggaatctgtgcccctgcagatcgatggcaaggaggagacgctggatttt
ccccgcagctggctcctgcctgtgctgcgggacaacgtgcagggtgcacggcttggcttc
ttcaccagttacttcttgcctttggcagctgccctgaaaagcagagccctggagtttacc
caggctgggaagagtgtggaggccaagatctacgacacgctgcagtggcaggtctggact
ctgctgcctggcttctgcacccaccccacagatgtgctgggagccttcaaggggctggcc
cgcaccctgggcatggccatcagtgagcgcccagacctccgccccactgtgtgccaggcc
ttgcgcaccctcatccacaaaggctgcgagacagatgcagagcgggcagaagtgggtcgc
tttgccaaaaatttcctgcccatcctgttcaatgtgtacagccaacctgagaaggatggg
ggcacaagtgctcagcgtcgctctgtgctggacactgtccgtgcttacctgactgtcacg
gatcctcagatggtgtgcggattcctggagaaagccagcgcaaagctgaccagtcttgag
agttccgagttcaccagactctccatcctggacctggtagtggcaatggcaccctatgct
gatgagcagtccctgggctccctgtaccgtaccatccagccttccctccagagcaaagag
cgcagcatgcagaagaaggcgtatcgcgtgctggaggaggtgtgtgccgctccccatgct
ccctgccaggccttcgtccgctcccacctccaggacctgcaggcagcgctgctggactcg
ctcaagagcgcagcatccccagccaagagaccccggctgaaatgcctgctccacattgtg
aagcagctatctgcagagcacgagccttttgtcactgccctggtcccagaggtcatccta
tgcaccaaggaggtgtcggtgggggcccgcaagaacgccttcatgctgctcgtggagatg
gggcatgctttcatccgctttggacccacccctgaagaggctatgcagcggttcctgctc
ctgatctacgtggggctcactggctcagtcaccatgatcagctgcaccgtgctggcactg
acccgcctgttctttgagttcaaagatcacctggagttcagtgtggtggagcagctgctg
cagaacatctgcctgttgctggcctcccgcacgcgggatgtggtcaaggcagccctggga
ttcctgaaggtcacactgctgctggtggacaccaagctcctggccaagcatgtccagacg
atgctggaggccgtagggaacctttcagacgacatgagacgccacttccgtatgaagctg
cgaaacctcttcatcaagttcatccgcaagtttggctttgagctggtgaaggggctgctg
ccagccgagtaccataaggtgctggtgaacatccgcaaggcggaatcccggagccgcaag
cagcgtgccctgaagaaggcggctgcggatatggatgaagaggaggcaccaccaccacag
cccagaggagacagtatggaggagatccttgctgactcagaggatgaggaggaggaagag
gaggaacggcaacagagcaaagagtggaggaagcaagcacggcagaagggccaggcatgg
ctgaaggaaggggaagatgatgagcccctcaacttcctggaccccaatgtgtcccagcgg
gtgctggccaccaagccaggccccaagcggtccagaggagtgagccatgatttccagatg
tctgaggatggacgcctgatcatccatgacgaggaagaggagatggatgatgatgaagcc
aaaggagcagatgaggagatggcagatgtgctgcaagatgtgggtctccgcagtaagaaa
agtcagaagcgtcggttcagagaggagccagatgatgaggaagctgaggctggaacctat
tctcagtatagagctggaggctctgggatccatcgacagctgaacaaggagccagccttt
ggtgcagagtacagatccaagaaaggtaaaggtgacgtgaagaagaagggccaactcgac
ccctatgcctacatccccctgaacagagctaaactcaacagaaggaagcgggcaaaaatg
cagggccagttcaaaggcctgatgaagggagcccagcgtggggccaaggctggccgcagg
aaccgtctaaagtcccagcgctcctga
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