Aphelocoma coerulescens (scrub jay): 138112599
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Entry
138112599 CDS
T10543
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
138112599 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138112599 (TAF5)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138112599 (TAF5)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
138112599 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
138112599 (TAF5)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
138112599 (TAF5)
STAGA complex
138112599 (TAF5)
TFTC complex
138112599 (TAF5)
SAGA complex
138112599 (TAF5)
SLIK complex
138112599 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
Tricorn_2nd
PEP5_VPS11_N
CDK5RAP3
Beta-prop_ACSF4
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
138112599
NCBI-ProteinID:
XP_068876032
LinkDB
All DBs
Position
6:24510714..24521308
Genome browser
AA seq
788 aa
AA seq
DB search
MAALHEEPAEVAAAQPDPEAGTPPPPPAVPPAAAAAAAAPAAAPATAAEGEAAGAGGDAA
PTKPAAPGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPAS
AGLLGGSGSDADSGEALLGRGTSAAAVAIGGSVATVATSSPGVAAVAAVPPGKVGGAVVV
EDQPDVSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV
YNQHESEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRD
SYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKV
FFGLLKEPEFDVPLDDEDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPEL
KDSDKLDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADS
TVRVWSVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFS
PDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW
ATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPI
HSLAFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMD
NTVRLWDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLL
AAGAYSSQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcatgaggagccggcagaggtggcggcggcgcagccggaccccgaggcg
gggacgccgccgccgccacccgcggtgcctcccgccgccgccgccgccgccgccgctccc
gccgctgccccggccaccgccgcggagggagaggcggcgggagcaggtggggatgcagca
cccacgaaaccagcggcgccgggcccggccgcctccccggcggcgctggaccggcagacg
cttgtggccgtactgcagttcctgcggcgcagcaacctccgggagtccgaggagatccta
cgccgcgaagcccgcctgctcggcgatgacctgggcgccgccgctctcagccccgccagc
gccgggctcctggggggctccggcagcgacgcggactccggcgaggcactgctcggccgg
ggcaccagcgctgccgccgtcgccataggaggcagcgtcgccactgtcgcgacttccagc
cccggggtggccgcagttgccgccgtgccgccggggaaagtcggaggcgccgtggttgtg
gaggatcagccggatgtgagcgcagtgttgtcggcctacaaccagcaaggggacccgacg
ctgtacgaggagtactacagtggattgaaacacttcatcgagtgttccctggactgtcat
cgggcggagttgtctcagctcttttatcctctctttgtgcacatgtacttggaattggtc
tacaatcaacatgagagtgaggcaaagtctttttttgaaagatttcatggggatcaggag
tgctattaccaggatgacctgcgtgtattgtcaagcttaaccaaaaaagaacatatgaaa
ggtaatgagaccatgctggatttccgaacaagcaagtttgtgctgcgcatttcccgtgac
tcttaccaactcttgaagaggcatcttcaggaaaagcagaacaatcagatctggaacatt
gttcaggagcatctttacattgatatctttgatggaatgcctcgcagtaaacaacagata
gatgctatggttggaagcttggctggggaggcaaagcgagaggctaataaagcaaaggtt
ttcttcggcttacttaaagaaccagagtttgatgtgcctttggatgatgaagatgaagaa
ggagaaaatgaggaaggaaagccaaagaagaaaaaacctaaaaaagataatgtcgggtca
aaaagtaaaaaacaggaccctaatgctcctccccaaaacagaattcctctgcctgaactg
aaagactctgacaagctggataaagtaatgaatatgaaggaagcagcaaggcgagtgcgt
cttggaccagagtgcctgccctccatctgtttctacacattccttaatgcttaccagggt
ctgactgcagtggatattacagatgactccagcatgattgtaggaggctttgctgactct
actgtcagagtgtggtctgtgactccaaaaaagctacgtagtgtaaaaacagcagcagac
ctcagtctcattgacaaagaatcggatgatgtcttggagaggatcatggatgaaaaaaca
gcaagtgagttgaagattttatatggtcacagtggacctgtctatggcaccagcttcagt
cctgataggaactatctgttgtcctgttctgaggatggcactgtgagattgtggagtctc
caaacattcacatgtttggtgggatataaaggacataattatccagtttgggatacacag
ttctctccttatggttattactttgtgtcggggggacacgacagagtggctcgtctgtgg
gcaacggatcactaccagccattacggatctttgctggccatcttgcagatgtgacgtgt
acccgatttcatcccaactccaactatattgctacaggctcagcagacaggactatacgg
ctctgggatgttttgaatgggaattgtgtaagaatattcactgggcataagggaccaatt
cattcattggcattttctcctaatgggcgattcctggctactggagcaacagatggaaga
gttctgctgtgggatattggacatggcttgatggttggcgaattgaaagggcacactgac
actatctatgcactcagattcagtagagatggagagattttagcatcaggttcaatggat
aacacagttcgtctgtgggatgctgtgaaggcatttgaagatttagaaactgatgacttt
actacagccactggacacataaacttgcctgagaactcacaggacttgctactgggcaca
tacatgaccaaatcaaccccggttgttcatctccatttcacacgcaggaacctgctgctg
gctgcgggagcctacagctcacagtag
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integrated database retrieval system
