Aphelocoma coerulescens (scrub jay): 138112601
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Entry
138112601 CDS
T10543
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Ribosome biogenesis [BR:
acoe03009
]
Eukaryotic type
90S particles
Other 90S particles
138112601 (PDCD11)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138112601
NCBI-ProteinID:
XP_068876034
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Position
6:24524709..24548949
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AA seq
1832 aa
AA seq
DB search
MASMEENFPRGGIHKKPAEGKTPKPKLERDNLFDVQHEEKPQKRKRSQKDQGRQKKFKAD
KTAAAEDNIMNIGPLTIEVLSEGMLLLGCIKEVSDYELAISLPNGLSGFVPVTQISDAYS
KLLTKQVAQGELLEELNSLPDMYSPGTLVRCIVTSIEKSADGRRSVKLSIDPKKVNKGLS
STALAAGMLLSGSVLSVEDHGYLIDIGVTGTYAFLPHQKAKNYIKAVKKGPDLKIGQNLN
CLIVEVKNEGRVVCLSIDRSEVAASIASERQNWALSNLLPGLVVKARVQKVAPLGMKLTF
LSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHPGGAPRQLP
GQRMGAVLEEATVKAFYKQFGAVFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCKHKCR
IIDYSLMDEMCVVSLKHQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRGLV
PSLHLSDVILKQPEKKYNIGDEVKCRVLECNPEGKKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSDPISCPDKVFYEGQVLKVMVLKCE
PQQERLLLSFRLSSKPGPEGKWKCTPKEKQEVKYQIGEIVDVKILKKKDNGLEVSILEDE
DNVVAWIPTLHLSDFVATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISAVQEE
QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSTDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKELKEIRDLLRRGDPSIC
ELVPGKGVHLVVQDVREDGSALFSGSSVTGLTVTATRYHLGDKNIAPGEKRKAVVLHVDA
LTSEVYVSLREELLKQRPKRRLRENSQHSAVVQHITEHFAIVSLLETGQLAAVPIACHFN
DTFRFDSEKLGVGQTISITLKAVKENDHGVLLAVQGPAKKNVFVRVRNESETALEEMLPA
VKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPLGSFPTSTLKAGQKV
TARVIGGRDVNTHRYLPITHPHFTQSIPELSIRPSEKEGEFTAMLNLKEDSSLKKLGLYN
VGQTVTCFVKKYNMLKNWLEVEVGPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISATV
TGTDATETNLCLSLTGIQSLEQDTISVGMITKVTPHIGLTIALPGGKTGKVSIFHLSDTY
TEDPLGKFKVGKIVRCYILSNENGKIQLSLRQSRLNPKVNSKVEDIEIVSIKDVKKGQLV
RGYVKSITPSGVFFSLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVNRR
EKHIELSLLPEDTGMPSVLPESLGLPQYGAEEEKKEPDDEEKREEPKLKTKRRRGNSESG
QEAKPKKRKICPAEENDSGIEVYYREEDEDDQEEEAAEKKSKVRKPGEAPRLQVSMGFTW
DEDNAVDIPVLDQKEESSESEEEEDMQSKLKKQTKKEKELEKQKKEKELCKVEAALMDPS
RQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN
VWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYATSEKYKQAEELYHTMLK
RFRQDKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH
AKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL
DYEKKFGTAESVLGVKRAALEYVETKSSLADT
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccataaaaagcctgcagaggga
aaaacacccaagccaaagttagagcgggacaatttgtttgatgttcaacatgaagaaaaa
cctcagaaaagaaaaaggagccaaaaggatcaaggaaggcagaaaaagttcaaggcagac
aaaacagctgctgctgaagacaatattatgaatattggaccactcacaattgaggtgctc
agtgaggggatgctgctccttggctgtataaaagaggtcagtgactatgagctcgccatc
agtttgcccaacggcctctccggatttgtgccggtcacgcagatcagtgatgcctacagc
aaactgctgaccaagcaggtggcccaaggagaactcctggaggagctgaattcgctccca
gacatgtattctccagggacactggtcaggtgcatcgtgaccagtattgagaaaagtgcc
gatggacgtcgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggcctgagc
tctacagcactagcagcaggcatgctgctctctggctctgtattgagtgtggaagaccat
ggctacctcatagatattggtgtcactgggacttatgctttcctgcctcatcagaaagcc
aaaaattacatcaaagcagtcaagaaagggcctgacttgaaaataggccagaacctgaac
tgcctcattgtggaagtgaagaacgaaggcagggtggtctgtttgtccattgaccgatca
gaggtggctgcatccattgcctcagagcgacagaactgggcactctctaatttattgcca
gggctggtggtgaaagctcgagtgcagaaggtggctccacttgggatgaaactgacattt
ctgtcttacttcactggcattgtggatttcatgcacatggacccagagaaatccatgagc
tattctccagatcaagtggtgaaggcctgtgtgctgtctgtacaccccacgtcgagggcg
gtgcggctgacgctgcgcccgcccttcctgcaccccgggggagccccacgccagctcccc
ggccagcgcatgggggcagtgctggaggaggccacagtgaaagccttctacaagcagttt
ggggctgtctttgagcttgatgacggcactcttgcatttgcacggttgaagcatctttca
aaaaccagaaaatcctttaaacctggggcatttaaggaaggctgcaaacataaatgtcgg
atcatagactacagcctgatggatgagatgtgtgttgtatctctgaaacatcagattatt
gaagcacggtttctgcaataccaggatatccacacaggtgatgtggtgcagggcaaagtg
ctctctctaaaacccattgggatgcaggtgaaagtggctgatgggattagaggacttgtg
ccatccctgcatctctctgatgtgatcctgaagcagcctgagaagaagtacaacatagga
gatgaagtcaagtgtcgggtccttgagtgcaatcctgaaggaaagaagctgatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccaattatgaagatgcaaaa
ccaggcctgattacacatggctttgtagtgtgtgcaagggaatttggctgcattgtgaag
ttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcagatcccatatct
tgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaatgtgag
cctcagcaggaaagactcctgttgtccttcagattatcaagcaagcctggccctgagggc
aaatggaaatgtactccaaaggagaaacaggaagtgaaatatcaaataggagagatagtt
gatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaagatgaa
gacaacgtggtagcctggatccccacgctgcacctgtctgactttgttgctacctccaag
ctcctgtggcactgtcttcaagagggagatgtcctgcccagagtcatgtatctaagtgac
aagggagagcacattatcttgagcagaaagtctgcagtgatttctgctgtacaggaggag
caagttgtgagaagcttctctgaaatccagcctggcatgctgttgactggttatgtgagg
aatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacaggactggcacct
aaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggttggacag
actgtgattgcaaaggtgatgagcactgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtctgagtgcagctcaggggattctgctgcagagagctttgccctcctgaatcaa
tatttcaaggagctgaaagaaatcagggacttgttgagaagaggggaccccagcatttgt
gagttagtgcctgggaagggagtgcatctggttgtgcaggacgtgagggaggatggctca
gcactgttcagtggcagctctgtcacaggcttgactgtaactgccacccgctaccatttg
ggagacaaaaatattgctcctggtgagaaaaggaaggccgttgttcttcatgtggatgcc
ctcacatccgaggtgtatgtttctcttcgggaagaactgttaaagcaaagacccaagcga
cggctccgagagaactcccagcactctgcagtggtgcagcacatcacagagcactttgcc
atcgtgtctctgctggaaacaggccagctggcagctgtccccatcgcctgccacttcaac
gacaccttccgcttcgactcggagaaactgggggtgggacagacaatctctataacctta
aaagcagtgaaggagaatgaccacggggtcttgctagcagtacaaggcccagccaagaag
aatgtttttgtaagggtgaggaacgaatcagagacggcattagaggagatgcttcctgcc
gtgaaacactcgctgtccccgggggatgttgttactggtaccgttaaatccgtcaaacca
acccacgtcactgtggctattgatgacaagctgacaggttcaatccatgcctcccggatt
ctggatgaggtgcccctaggctcttttccaacttctactctgaaagctggacagaaagtg
actgctcgagtcattggaggcagagatgtgaatactcacaggtacctgcccattacccat
ccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaaggggaa
ttcacagcaatgctgaaccttaaagaagacagttccctcaagaaactcggactgtacaat
gttggacagacagtcacctgttttgtaaagaagtataacatgctcaaaaactggctggag
gtagaagttggccccgacattcgaggaagagttcctcacctgctgctgtctctgaacacc
aaggtcttaaaacatccagaaaagagctttaaaaatggccaggcaatatcagctacagtg
actggaacagatgccactgaaacaaacctctgcttgtcactcacaggaattcagtcactg
gagcaggacaccatctctgtaggcatgataacaaaggtgactccacacattggtttgacc
attgcactgccaggtgggaagactggcaaagtcagcatctttcacctgagtgatacttac
acagaggaccctctggggaagttcaaagttggcaagattgtcaggtgttacatcctctcc
aatgagaatggtaaaatccagctatctctccggcagtcccggctaaatccgaaggtgaac
agcaaagtggaggatattgaaatagtgagtattaaggatgttaaaaaaggccagctagtg
agaggctatgtcaaatcgattactccatcaggtgtattcttcagcttgtccacttctctc
ctgggtcgaatcctgttccagaatgtttccccgtactttgtacagaaacactccttatat
gaaaagtacctgcctgagggaaaactgctcactgccaaagtgcttggtgtaaatagaaga
gaaaaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtcttgcct
gaatccctaggcctaccacaatatggtgcagaggaagagaaaaaagagccagatgatgaa
gaaaaaagagaagagcctaagctgaagacaaaaaggagaagaggaaactctgaaagtggt
caggaggcaaagccaaagaagaggaagatctgcccagcagaggaaaatgacagtggaatt
gaggtgtattaccgtgaggaggatgaggatgaccaggaggaagaggcggctgaaaagaaa
tctaaggtgaggaagcctggcgaagctcccaggctgcaagtttccatgggcttcacctgg
gatgaagacaatgcagtggatatacctgtgctggatcagaaagaagagagctcagagagt
gaggaggaggaggatatgcagtccaagctaaagaaacaaacaaagaaggagaaggagctg
gagaagcagaagaaggagaaggagctttgcaaagtagaggcagctctaatggacccgagt
cggcagccccagtcagcagatgactttgaccgcctggtgctgggcagtcccaacagctcc
atcctctggctgcagtacatggctttccacctccaggctacagagattgagaaggccaga
gctgtggcagagagagcacttaaaacaatcagtttcagggaagaacaggagaagctgaat
gtctgggtagctctgctgaacttggagaacatgtatggtactgaggagacactgatgaag
gtctttgagagagcagttcaatacaatgaacctctgaaagtcttccagcatctgtgtgac
atctatgccacttctgagaagtacaagcaagcagaagaattgtaccacacgatgctgaag
cgtttccgtcaggacaaatccgtgtggctgaaatacgcctctttcctcctgaagcaaggc
cagactgaggctacacacaggctcctggagcgtgctctcaaggctctgcccaccaaagag
catgtggatgtcatttcaaggtttgcacagctggagttccattctggggacaccgaacat
gccaaggccctctttgagagcactctcagcagctatcccaagcgaacagacatttggtcc
atctacatggacatcatgatcaagcatggcagccagaaggaagtacgggacatctttgag
agggtcatacacctgagcctggcaccaaagaagatgaaattcttcttcaaacgctacctg
gattatgagaagaaatttggtacagcagaaagtgtcctgggtgttaaaagagcagcactg
gagtatgtggagaccaagagttcccttgctgacacttaa
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