Aphelocoma coerulescens (scrub jay): 138112608 Help Entry 138112608         CDS       T10543                                  Symbol COL17A1 Name (RefSeq) collagen alpha-1(XVII) chain   KO K07603   collagen type XVII alpha Organism acoe  Aphelocoma coerulescens (scrub jay) Pathway acoe04382   Cornified envelope formation Brite KEGG Orthology (KO) [BR:acoe00001]  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     138112608 (COL17A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen DUF4869 Motif Other DBs NCBI-GeneID:  138112608 NCBI-ProteinID:  XP_068876064 LinkDB All DBs Position 6:complement(25091245..25127344) Genome browser AA seq 1515 aa AA seqDB search MDSVTRKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHG SSYVTSSGSGRLNSTSSSSSYRQAQSPSSTLTKSPGSTFERKTYVNRHATYEGSSSANSS PEFPRKDFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRS SSSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLGGYQSSS SLINAMSHSTGSVFGVPNNLAPTNHTLNAGLSSSSTVFGVQNNLSPSSSSVTQNATAASA AYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDVLRKDCKFLLLEKEKAPAKEMELLVMT KDSGKVFSASNTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGGLKSMPKRDKETY AEIRGGDAGGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLFLLGLLFGLIALAEEVRKLKS RVEDLEKINGGLLAINQGNSKIEKDVSRVDFLHGISPSSTFPYENEESVWLMVKSRLNKE IERGYFRGERGERGEKGDMGIQGPKGDRGLPGVPGIPGPIGHAGPEGPKGQKGSMGEPGM EGPIGQRGREGLPGPRGEPGPPGFGEKGDRGAVGEPGPPGPPGPPGSAGLKGLMGSPGPQ GPPGPPGLQGFRGEAGLPGAKGEKGASGPPGPKGDQGEKGSRGLTGEQGSRGMPGPPGEP GAKGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGEPGLTGPQGPPGLPGNPGRP GAKGEPGAPGKVISAEGSSTITLPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGPRGEK GSPGEAVIETIRTEVSSLASQMLGDLQGRAGPPGPPGPPGESVQGPPGPRGPPGEGLPGP PGPPGRPGSSMSTSEAFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGNPGISAFSSHAGE RVTIQGPPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPPGPSGGSSQ EIQQYITDYLKSDNVRHYLTGAQGPPGPPGPPGLITTADGVTLDYAELATRVMSYMTSSS GRYESFSSSVSTTSILYQELLDLLQREEIRQYLIGPRGPPGPPGPGGDGMSLSLDYDELT RRFISYLSNSGMSIGLPGPPGPPGTPGISYSDLIAYLRNSEFSGVVGPPGPAGPPGPPGI PGSPGTSLEDVSAYLQNVGYSSLSGVRGPPGPPGPPGPPGFSGTGLLSYADITHSDEFRS ELIQYLKSDEIRSYISGPPGPPGPQGPPGPKGDSGLVSGSMSSSYQGLRASEHLHGGSLG AEGSHRGSLGSGSSYGSSMSSMSSYHASVGSDGTYDASMGTDGSFDGLLTEEESHRRSAG SSRSFSNSFSGSLDYDKLALRVSESLQSRGILQDLMAYTAQGPAGPPGPPGPPGISKVFA AYGNVTADLMDFFRTHGAIQGPAGEKGERGYPGPKGDPGPMGPPGRHGHRGPKGEKGEKG EQAYVGRRKRRSIGV NT seq 4548 nt NT seq  +upstreamnt  +downstreamnt atggattctgtaacaaggaaaacgaggcaagatggatcagaagttactgaaagacttatt acagagactgtaaccacaagactgacatccttgccacccaaaggagggagcagcagtggg ctcaaaacatcatcccacactggaggaagtggagtggaaaagcggtcgtacacccatgga agcagctatgtgacctcaagtggaagtggtagattgaattcaacatcatcatcctccagc tacagacaagctcagtctcccagctctactctcaccaaatcacctggctcaacatttgaa agaaaaacctatgtcaaccgccatgcaacatatgaagggagctccagtgccaactcttct cctgagtttcccaggaaagattttgcatctgcctctacaagggggagaagccaaagtcga gagagtgaaatacgagtccgactgcagagcgcatctccctctggcagatggacagagttg gatgatgtgaaacgtttgctgaaaggaagtcgatctgccagctgcagccctactcggtca tcatccagtacactcccgataccaaaaaaggctgtggtggagacgaagatggtcactgag agctctcagtcagtgtcggggacatatgacactaccatactgaatactgccctcccttca tacatgtggtcctccactctgcctgctggctcttcccttggtggataccaaagcagctct tccttgatcaatgccatgtctcactctacaggatcagttttcggtgttccaaataacctg gctcccaccaatcataccctgaatgcaggcctgagctcttcctctacagtgtttggagtt caaaacaacctgtctccaagctcttcatctgtgacccagaatgctacagcagcctctgca gcatatgggatgaagaacacttctcagagcaacaccatggcaagtactggtgtgtctgcc tcagcaggaggaactgttttgagctcccagggagatgacgttctgcgcaaagactgcaag ttcctgctgctggagaaggagaaggcaccagcaaaggagatggagctcttggtcatgaca aaggacagtggcaaagtctttagtgcctctaacactgggcttaatggagggtcttttgta gaagacaccttgaagaaagagaagcagggattttcctcctcttatgccacagatactggc ctaaaatcagatgcaaatggagggctgaaatccatgccaaaaagggacaaagaaacttat gcagaaatacgaggtggtgatgcagggggtgccattggatcagcaccatcctggtgtccc tgtggttcctgctgtagctggtggaaatggctcctgggtttgcttctagcatggttgttt ctcctcggcttgctttttggactcattgctctggcggaagaagtgagaaagctgaaatct cgtgtggaagacctggaaaaaatcaatggtggcctcctggcaattaaccaagggaattca aaaatagaaaaggatgtttcaagagtagactttcttcatggtatctcaccctcttcgacc ttcccatatgaaaatgaagagtcagtctggctgatggtgaagagcagactgaataaggaa atagaacgaggctacttccgaggggagagaggagaacgtggtgagaaaggtgacatggga atacaaggtcccaaaggtgaccgaggacttcctggtgtcccaggcattcctggtccaatt gggcatgcaggaccagaaggaccgaaaggacagaagggcagcatgggtgagcctggcatg gaaggtcccataggacaaagaggtcgagaagggctaccagggcctcgaggggagccggga ccacctgggtttggagaaaaaggagacagaggtgctgttggtgagccaggtcctccaggg ccaccaggacccccaggttctgctggcctaaaaggtctgatgggttctccaggcccacaa ggtcctccaggtcctcctggcctacaaggatttagaggtgaagcaggactcccaggtgct aaaggtgaaaaaggagccagtggaccccctggacccaaaggtgatcagggtgagaagggt tctcgtggattgacaggtgaacaagggtcaagaggaatgcctggacctccaggagagcca ggggctaaaggacctgtaggacaagctggtcgtgatggacagccaggtgaaaaaggtgaa cctggtcttatgggaatgccaggtgccagaggccctccaggacccactggagatgctggg gagccaggtcttacaggaccccagggaccgccaggacttccaggcaacccaggccgacca ggggctaaaggagaacctggagctccaggaaaagtcataagtgcagagggttcatcaact attactctgccaggcccaccaggtcccccaggcccacctggccccactggtcccccaggt gttccaggtcctgttggaccagctggtctccctggacagcaaggtccacggggtgagaaa ggatccccaggtgaagctgtgatagaaaccatcagaacagaagtctcatcattagcatct caaatgctgggagatttgcaagggcgagcaggaccaccaggtccccctggaccaccaggt gaatctgtgcagggaccccctggacctcgtggtcccccaggagagggattgccaggacct ccgggcccaccagggagaccaggatcatccatgtccacctcagaagcattcttcacaggc ccaccgggtccaccaggaccaccaggcccgaagggagaccaaggtgaacgaggtccacgg ggattcacaggagaaccgggtaatcctggcatttcagcattctcctcccacgcaggtgaa agagtcaccatacaaggacccccaggcccaccaggcccgcctggaccaaaaggtgatgca ggtgtcccaggcgcacctggcatcccaggagcatctcgaggtggatccagacaaattcag ggacccccaggacctcctgggccacccggtcctcctggcccaagtggaggttcatctcaa gagattcagcagtatatcactgactacctgaagagtgacaacgtcagacattatttgact ggtgcccaaggcccaccaggccctccaggcccacctggacttatcaccactgcagatggg gtgaccttggattatgcagagctggctacccgtgtcatgagctatatgacaagctcttca ggtcgctatgagtcattttctagctcagtatcaactacatccattttgtaccaagaactt ttggatctgctgcagagagaagaaattcgtcagtatctcattggacctcggggcccaccg ggacctcctgggccaggaggagatggaatgtctctgtcactggattatgatgagctgacc aggaggtttatcagctacttgtcaaattctgggatgagcattggactccctggaccacct gggcctccagggacacctggtatatcttacagtgacctgatagcatacctgcgaaactct gaattcagtggtgttgttggaccccctggtcctgcagggcccccaggacctccagggatc cctggatcaccaggcacctctcttgaggatgtctctgcctacctacaaaatgttggatac tcttccctgtctggagtccggggcccacctggccctcctggccctccaggaccaccaggc ttctctggaactggcctcctgtcctatgctgacatcacccacagcgacgagttcaggagt gagctgatccagtacctgaagagtgatgaaattcgaagctacatctcaggaccccctggg ccccctgggccacagggaccaccaggacccaaaggagacagtggcttggtgtctgggtct atgtcttcctcataccaagggttacgagcttctgagcacttgcatggagggtcccttggt gctgagggctcccacaggggctcactgggctcaggcagctcgtatggcagctccatgagc agcatgtcctcttaccacgcctcagtgggcagcgatggcacttacgatgcctccatgggc actgatgggtccttcgatgggctgctgacagaggaggaatcacacaggagatcagcaggg tcgagcagatccttcagcaactccttctctggttccctggattacgacaagctggcactc cgtgtgtcagagagcctgcagagccgaggtattctccaggacctgatggcttacactgca cagggacccgcaggtcccccaggccctcctggtccccctggcatcagcaaggtctttgca gcctatggcaatgtcaccgcagacctcatggacttctttagaacacatggtgccatccag gggccagccggtgaaaagggggagaggggttatcctggacccaaaggtgaccctgggcca atgggcccaccaggacgacatgggcacaggggaccaaaaggagagaagggagagaaaggt gaacaagcgtatgttggcagaagaaaaagaagaagcattggtgtttaa

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