Aphelocoma coerulescens (scrub jay): 138112997
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Entry
138112997 CDS
T10543
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
acoe01002
]
138112997
Peptidases and inhibitors [BR:
acoe01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
138112997
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
138112997
NCBI-ProteinID:
XP_068876817
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Position
7:complement(19949461..19984340)
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AA seq
1207 aa
AA seq
DB search
MFLRYWWLLWILEHHEFLAQNLREEKRYGLRRSKPKHILSNTVEEYPSPSDQDEDCILEI
AFLLDSSESAKDYNHEQQKKFVLQTVDRMKSLQLSSGRTLRWRMALLQYSSTVFIEQTFH
DWKGPEAFKSHVAPITHIGHGTYTTYAITNLTQLYMTEGTWGSVKVAVLFTDGVDHPRNP
DIFAATADAKHQGIVFFTMGMTRVAEEVSNAAKLRRLASVPASRFVFNLQEKETVEKVLK
EMKDLSEEECPQVDMCNCKKGERGLPGPAGKKGRTGDDGAPGLKGAKGDPGLNGIPGRDG
IEGKSGYKGEKGERGECGIPGIKGDRGPEGPVGPRGVRGIQGPQGQSGDQGPEGLQGSKG
ERGLPGPPGLPGDTGIGLPGPKGDIGLTGRPGPVGPPGAGEPGLTGPQGPQGIQGERGSP
GEGLPGAKGDRGYDGPKGPRGLPGISIKGEKGDCGPPGLPGSVGLPGIGIQGEKGVEGPK
GPPGSRGLPGQGIPGPKGEQGLPGETGVPGERGIGEPGSKGDPGPSGLAGLPGLPGEDGA
PGQKGEPGLPGLRGPEGAPGIGIQGEKGDQGQRGIRGLTGPTGVPGPVGAKGEPGAPGRL
GMPGPPGRSVPGPKGDTGLPGLAGPIGEPGFGLPGAKGDRGLPGPPGPFGQKGDGYPGPP
GLPGLPGIPGEQGADGVGLPGPKGDPGSRGPAGPPGSPGKGLPGPKGTIGRPGPPGSLGP
PGEGIQGAKGEQGIQGMPGPRGPPGDGLLGEKGDRGATGDKGKKGEKGHVGDPGLSGEPG
KTGPKGDQGLTREDIIKLIKEICGCGVKCKEIPMELVFVIDSSESVGPENFEIIKDFVIA
LVDRVTVGRNATRIGLVLYSLEVRLEFGLNKYPTRQDVKRAIRKMQYMGEGTYTGTAIRK
ATQEGFSGARAGVRKVALVLTDGQTDRREAVKLDLVVREAHAANIEMYAIGIVNTSDPAQ
AEFVHELNLIASDPDREHMYLIDDFNTLSALESKLVNQFCEDEHGTLIYNHNENSATISG
QSFHSVSPSSLHYILKNNNVNRQSLSAQTPGVSTVESPLSLGHLPQPLAPYPERKKIKCL
FQTKVPPVVYEAYEEEQDEEKQPTFLTVDTRAVVPLLSSKQPLSDKVMTSSLSATGSTPR
PESVVDFQCKLRLDQGPCRVYTIRWYYDKKANACAQFWYGGCDGNANRFETEEECRQACV
FFSGGRN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgtttctcagatactggtggcttttgtggatacttgaacaccatgagtttttagcacaa
aatctcagggaagaaaagagatatggattgaggagatcaaaacctaaacacattctgtca
aatactgtagaagaatatcccagcccaagtgatcaagatgaagactgcattctggaaatt
gcttttttactggacagctctgaaagtgctaaggactataatcatgaacagcagaagaaa
tttgtactgcaaacagtagacagaatgaaaagtctgcagcttagttctggacgtaccctt
cgctggaggatggccttacttcagtacagcagcactgttttcatagagcaaactttccac
gactggaaaggtcctgaagcattcaaatcccacgttgctcccatcacccacataggtcat
ggcacctacacaacttatgctataactaatcttacacagctctacatgactgaagggact
tggggtagtgtaaaagtagccgtgcttttcactgatggagtggatcatccaagaaaccca
gatatttttgcagccacagctgatgctaaacaccaaggaattgtatttttcacaatggga
atgaccagagtggctgaggaggttagcaatgctgccaagctccggcgcctggccagtgtc
ccagcatccaggttcgttttcaacctccaggagaaagaaactgtggagaaggttctcaag
gaaatgaaagacctgtctgaggaagagtgtccccaggttgacatgtgtaactgtaagaag
ggtgaaagaggccttcctggtcctgctggtaaaaagggtcgcactggggacgatggagct
ccaggcctgaaaggagcaaagggggacccaggtcttaatggaatcccaggacgagatgga
atagaggggaaatctggatataaaggagagaagggtgaaagaggtgaatgtggaatccca
ggaataaaaggagacagaggccctgaaggtccagtaggccccagaggagtaagagggata
cagggtcctcaaggacaatctggagatcaagggcctgaaggcctgcaaggatcaaagggt
gaaagaggtctccctgggccacctggcttgcctggagacactggaataggactgccaggc
ccaaagggtgacatcggtttgacaggaaggccgggccctgttggcccacctggggctggt
gagccaggacttacggggcctcaaggaccacaaggcattcaaggagaaagaggttcgcca
ggagaagggcttccaggagcaaagggagaccgtggctatgatggaccaaaaggccctcgt
ggacttccaggcatcagcataaaaggtgaaaagggtgactgtggtcctcctggtttacca
ggttcagttggattacctggaattggaattcaaggagaaaagggagtggagggcccaaaa
ggaccacctggctctagagggctaccaggacaggggatacctggaccaaagggtgaacaa
ggcttgccaggagagactggagtgccaggagaaagaggtattggagaacctggttctaag
ggtgatccagggccttcaggactcgcaggtctgcctggtcttccaggagaagatggggcc
cctggacaaaagggtgaaccaggattaccaggtcttagaggtcctgaaggtgctccaggg
attggaatacagggggaaaagggagatcaaggacagagaggaatacgtggattaacagga
ccaacaggagtgcctgggcctgttggagctaaaggagagcctggtgcaccaggacgtctt
ggaatgccaggccctcctggaagatctgtgcctggaccaaagggtgatactgggttacct
ggtcttgctggaccaattggagaaccaggttttgggcttcctggggcaaagggtgaccga
ggccttccaggaccccctgggccctttgggcaaaaaggagatggttatcctggcccacct
ggcttgccaggtctccctgggattcctggtgaacaaggcgcagatggagttggactacca
ggacctaagggtgatcctggtagtagaggaccagctggcccccccggttccccaggaaaa
ggcctgccaggaccaaaaggaaccataggacgcccagggccacctggctctctgggacct
cctggagaaggtattcaaggagctaagggggaacaaggtattcaaggaatgccaggaccg
cgaggtccccctggagatgggcttctaggagagaagggagatcgaggagctacaggtgac
aaggggaaaaaaggagaaaaaggtcatgtgggtgaccccggtttatctggagaacctggc
aaaactggaccaaagggagaccaaggcctaacaagagaagacataattaaattaattaaa
gagatatgtggttgcggtgttaaatgtaaggaaattcctatggagcttgtatttgtgatt
gacagttctgagagtgtgggaccagaaaattttgagattatcaaagactttgtaattgct
ttagtagacagagtaactgtaggcagaaatgctaccagaattggccttgtgttatacagt
ttagaagttcggctagaattcggtctcaacaagtatccaacccggcaggatgttaaacga
gcaatcagaaaaatgcaatacatgggagaaggcacttacacaggaactgccatccgcaaa
gcaacccaggaaggattttctggtgctcgagcaggggtgcggaaagtagctcttgtgcta
acagatggccaaacagacaggagagaagctgtaaaactagatcttgttgttcgagaggct
catgcagcaaacatcgaaatgtatgcaataggaatcgtaaatacttcagatccagcacag
gctgagtttgtgcatgagctaaatctgattgcttcagacccagacagagaacacatgtat
ctcattgatgactttaacaccctctcagctctggagtccaaattagtcaatcaattttgt
gaagatgagcatggcaccttaatatacaatcataatgaaaacagtgcaactataagtgga
caatccttccattcagtatctccaagttccttacattacatacttaagaacaacaatgtt
aacagacaatcactttcagcacagacacctggagtatctacagtagaaagtcctctgagt
cttggccatcttcctcaaccattagctccgtatccggaaagaaaaaaaatcaaatgctta
tttcagaccaaagtacctcctgtagtatatgaagcctatgaagaggaacaagatgaagaa
aaacagccaaccttcctaacagtagacactagagctgtggtaccattactgtcatctaaa
caaccattatctgataaagtgatgacatcatctctttcagctacaggctccacaccaaga
cccgaaagtgttgtggacttccagtgcaagctaaggttagatcaagggccatgccgcgtt
tatacaataaggtggtattatgataaaaaagccaacgcctgcgctcagttttggtatggt
ggctgcgatggaaatgcaaaccgctttgagactgaagaggaatgtagacaggcttgtgta
tttttttctggaggtaggaattag
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