Aphelocoma coerulescens (scrub jay): 138113102
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Entry
138113102 CDS
T10543
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03022
Basal transcription factors
acoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
138113102 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
138113102 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138113102 (ERCC3)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138113102 (ERCC3)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
138113102 (ERCC3)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
138113102 (ERCC3)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
138113102 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA_34
Motif
Other DBs
NCBI-GeneID:
138113102
NCBI-ProteinID:
XP_068877071
LinkDB
All DBs
Position
7:25403331..25422943
Genome browser
AA seq
780 aa
AA seq
DB search
MGRKERDKKKSKKRHYDDDEDDEDEGAGKEPQEAVPSAAGKQVEESGTKVDEYGAKDYRL
QMPLKADHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESTHPD
VIQQLLQDHVIKECRLRNAEGEETELITETFTSKSAISKSSEGGLGPSTSQGTDAQNKPD
VPADLFEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEA
ERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAVRLGKPYIYGPTAQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSTKEEQQQLLQKVLQASDLD
AEEEVVAGEYGSKSAQVSRRAGTMSSMSGADDTVYMEYQSSRSKASSNKHIHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggcaggaaggagcgggataagaagaagtccaagaagcgccattacgatgacgacgaa
gacgatgaggacgaaggtgccgggaaggagccgcaggaggcggtgccgtcggcggcgggg
aagcaggtggaggagagcggcaccaaggtggacgagtacggcgccaaggactaccggctg
cagatgcccctgaaggccgaccacagctcgcggcccctctgggtggctcctgatggccat
atatttctggaagccttttctccagtttacaaatatgcacaggactttctagttgccatt
gccgagcctgtgtgcagacccacccacatccacgagtacaagctgactgcctactctctg
tacgctgccgtgagtgtgggcttgcagacaagtgacatcactgagtatttgcagaaactc
agcaagactggcgtcccagatggaataattcagtttatcaagctgtgcactgtcagctac
gggaaggtgaagctggttctgaaacataacaggtattttgtggaaagtacccaccctgat
gtcattcagcagcttctgcaagaccatgtgattaaagaatgccgcctgagaaatgctgag
ggtgaagagacagagctcattacagagacattcacaagtaaatcagcgatttccaaatcc
agtgaaggtggccttggtccatcaacttcacagggaacagatgctcagaataagccagac
gtcccagctgacttatttgagttttatgaacagatggacaaagatgaggaggaagaggag
gaaacgcagacagtgtcctttgaagtcaagcaggagatgattgaagaacttcagaagcgt
tgtatccatttggagtaccccttgctggcagaatatgatttcagaaatgattctgtgaat
cctgatattaatatagatctgaaacctactgctgtcctcaggccctatcaagagaaaagc
ctaaggaagatgtttgggaatggacgagccaggtctggtgttattgtcttgccatgtggt
gctggcaagtctctggtgggagtgacggctgcgtgcactgtgcgcaagcggtgcctggtg
ctggggaactccgcggtgtctgtggagcagtggaaggcccagttcaagatgtggtccacc
atcgacgacagccagatctgtcgcttcacgtctgatgccaaagacaagcccattggctgt
tctgttgccatcagcacatattccatgttggggcacacgaccaaaaggtcctgggaagca
gaaagagtaatggagtggcttaaaagtcaagagtggggccttatgatactggatgaagtc
cataccattcctgcaaaaatgttcagacgtgtgctcactattgtacaagctcactgtaaa
ctggggctgactgctaccctggtcagagaagatgataaaattgttgacctgaacttcttg
attggaccaaagctctatgaagccaactggatggagctgcagaacagtggctacatcgct
aaagtccagtgtgctgaggtctggtgcccaatgtcacctgaattttacagagaatatgta
gctatcaaaacaaagaaaaggatactgctctacaccatgaacccaaataaattcagagcc
tgtcagttcctgattaagtttcatgagcgacggaatgataaaatcatcgtctttgctgac
aatgtgtttgcactgaaggaatatgcagtcagacttgggaaaccctatatctatggtcct
actgcacaaggggaaagaatgcaaattctacaaaacttcaagcacaatccaaaaatcaac
actattttcatttccaaggtaggggacacatccttcgatctgcccgaagccaatgttctc
attcagatttcatcccatggtgggtcacgaaggcaggaggctcaaagactgggacgggtg
ctgagagccaaaaaaggcatggttgcagaggaatacaatgcctttttttattcccttgta
tcccaagacactcaggaaatggcatattcaacgaaacggcaacgatttcttgtagatcaa
ggttatagcttcaaggtaatcacaaagctggcaggcatggaagaggaagaactttcgttt
tcaaccaaagaagaacagcagcagcttctccagaaagtcctgcaagcatctgacctggat
gctgaggaggaagtagttgctggagaatatggttcaaagtcagctcaggtgtcccgtcgt
gcaggcaccatgagctccatgtccggagcagatgatacagtttacatggaataccagtcc
tcacggagcaaagcatcttcaaacaaacacatccaccccctgttcaaacgcttccggaag
tga
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