Aphelocoma coerulescens (scrub jay): 138113370
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Entry
138113370 CDS
T10543
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
acoe04040
]
138113370
Ion channels [BR:
acoe04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
138113370
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
New_glue
IQ
FraC
Lustrin_cystein
Chlamy_scaf
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
138113370
NCBI-ProteinID:
XP_068877628
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All DBs
Position
7:20924048..20987360
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AA seq
2013 aa
AA seq
DB search
MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVNLGNLSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIG
ENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVTAAAVTASAESREPSA
AGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRISGSFHVSMDFLEDPALRER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTDEFNSVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLQQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPI
LNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVAT
EESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAMD
LPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKRK
QEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGMKDEILIDKLNENSFTEKT
DITASTAVCPPSYDRVMRPVKEKHEKEEKDGQK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacagcgcattgctgcagaaaaagctaagaatcctaaacaagat
cgtaaagacgatgacgaaaatgggccaaaaccaaacagtgatttggaggcaggaaagaca
ctcccctttatatatggcgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatcttc
cgattcagtgccacctctgccctgtacattttaactcccttcaaccctcttagaaaaata
gctattaaaattttggtacattcgttattcagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtataca
ttcactggcatttacacgtttgagtcactaataaaaatcattgcaaggggcttttgctta
gaagattttacttttcttcgagatccatggaactggcttgatttcactgtcattaccttc
gcgtatgtaacagaatttgtaaacctaggcaatctttcagctcttcgaactttcagagta
ttgagagctttgaaaactatttctgtaattccaggcctgaagactattgtgggagccctg
attcagtctgtgaagaagctctcagatgtgatgatcctgactgtgttttgtctgagtgta
tttgcactgatagggctgcagctgttcatgggcaacttgaggaataaatgcctacagtgg
cctccagaaaattttactttggaaacaaatattacttctcagctaaacagcaccataggt
gaaaatggtacattggttaattcaacagtgactccgtttgactggaaggggtacattgaa
gatgaaagtcatttttattttctggaagggcaaaatgatgctctgctttgtggaaatagt
tctgatgctgggcagtgtccagaaggatatacttgtgtgaaagctggtagaaaccccaat
tatgggtacacaagttttgacaccttcagctgggctttcttgtcactgtttcggctaatg
actcaggacttctgggaaaacctctatcagctgactcttcgtgctgctgggaagacatac
atgatattttttgttctggtgatttttctgggctctttctacctgatcaacctgatcctg
gctgtggtcgccatggcctacgaagagcagaatcaagcaaccctggaagaagcagagcaa
aaagaggcagaatttcaacagatgctggaacaactgaagaagcaacaagaagcagcacag
gcagcagcggtgacagcagcagcagtaacagcatctgcagagtccagggagcccagtgct
gcaggagaagcaggagggctctcagaaagttcctcagatgcatcaaaattgagctcaaag
agtgcaaaagaaaggagaaatagaaggaagaaaaggaaacagaaagaacagtctggagga
gaggaaaaagatgaagatgaatttcacaagtctgaatcagaagacagcatcagaaggaaa
ggtttccgattgtctatcgaaggcaatagactgacatatgaaaagaagtattcctctcca
catcagtctttgctgagcattcgtggctccctgttttccccaaggcgcaacagcagaaca
agtcttttcagcttcagaggtcgagcaaaggatgtaggatcagaaaatgactttgctgat
gatgagcacagcacttttgaagacaatgacagcagaagagattctctctttgtgccacgc
agacacggtgaacggcgcaacagtaacattagccaggccagtaggtcatccaggatgctg
gcagtgtttccagtgaatgggaagatgcacagcaccgtggattgcaatggggtggtttcc
ctggttggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacgacagaaacagaaatgaggaagaga
atatcaggttcttttcacgtttctatggacttcctggaagatccagctttaagggaaaga
gccatgagtattgctagcatcctcacaaacaccgtggaagaacttgaagaatcaagacag
aaatgcccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagtccg
cattggttaaaagttaaacatattgtcaacttagtggtaatggacccgtttgttgacctg
gctattacaatttgcattgttttaaatacactctttatggctatggaacattatccgatg
acggatgaattcaatagcgtgctttcagttggaaatctggtcttcactggaatcttcaca
gcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggctgg
aatatttttgatggttttattgtaacccttagcttggttgaacttggtcttgcagatgtg
gaaggactatcagttcttcgatcattcagattgttacgagttttcaaattggcaaaatct
tggccaacactaaatatgttgataaaaatcatcggtaattcagtgggagctctggggaat
ctgaccctggtactggccatcattgtgttcattttcgctgtggttgggatgcagctgttt
gggaaaaactacaaggaatgtgtctgcaaaattgcaagtgactgtgtgcttcctcgctgg
cacatgcaagattttttccactctttcctgattgtatttcgagtgctgtgtggagaatgg
atagaaacgatgtgggactgcatggaggttgctggccaagccatgtgccttacagtcttc
atgatggtcatggtgattggaaacctagtggtgctgaacctatttttggccttgctcttg
agctcatttagtgcagacaaccttgctgtgacagatgatgataatgaaatgaacaatctc
cagattgctgtggcaagaatgcagaaaggcatagattatgtgaaaagaaaagcacgtgaa
ttcatccaaaaagcttttgttaaaaaacagaaagctttagatgaaatcaagccacttgaa
gatttaaacaacaaaaatagctgtatttctaaccatacaactgtggaactaagcaaagac
catgactatattaaagatgcaaatggaaccaccagtggtataggcacaggcagcagtgtg
gaaaaatacataattgatgagagtgattacatgtcattcataaacaacccaagcctcact
gtgacagtgcccattgctgtgggtgaatccgactttgaaaatctaaacacagaagaattt
agtagtgaatcagacctggaagaaagcaaagagaagttaaattcatctagttcatctgaa
ggtagcacagttgatattggacttcctgcagaggaacaaccagaagctgaacctgaagaa
gcccaggagccagaggcctgcttcacagaaggctgtgtaagaaggttcaagtgctgtcaa
gtaagtatagaagaagggagaggaaagcagtggtggaacctcaggaaaacctgcttcagg
attgttgaacacaactggtttgagactttcattgtctttatgattctcctcagtagtgga
gctctggcttttgaggacatatatattgaacaacgtaaaactatcaagaccatgctggaa
tatgctgacaaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtggcc
tatggctaccaaacatattttactaatgcctggtgctggctggacttcctgattgttgat
gtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctggcaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtatgcagctattgactcaagagatgtattacagcaacccaagtat
gaagacaacttgtacatgtacttgtattttgtcatctttataatttttgggtcttttttc
accctgaatttgttcattggtgtcattattgacaacttcaatcagcaaaaaaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
ctgggatccaaaaaaccacaaaaacctataccaagaccagggaataaattccaaggcatg
gtctttgattttgtgacacagcaagtatttgacatcagcatcatgattctcatttgtctt
aacatggtaaccatgatggtagaaactgatgaccagagcaaagaaatggaaaatatttta
tactggataaacctcgtgttcattgtccttttcactggagaatgtgtcctgaaattaatt
tcacttcgccattactacttcactataggctggaacatttttgattttgtggttgtcatt
ctctcaatagtaggtatgttcttagcagagatgattgagaagtacttcgtatcccccaca
ctattcagagtcatccgacttgccagaatcggtcgaatcctgcgcctcattaaaggcgct
aagggaatccgcactctgctttttgctctgatgatgtctcttcctgctttgttcaacatt
gggctgctgctcttcctggtcatgttcatctatgcgatatttggcatgtccaactttgcc
tatgtcaagagggaagctgggattgatgacatgttcaactttgaaacgtttggcaacagc
atgatctgcctgtttcagatcaccacgtccgctggctgggatggtttgctcgccccgatc
cttaacagtggagagccagactgtgaccccaacaaggctcatccagggagttctgtgaaa
ggtgactgtggcaacccttctgttgggattttcttctttgtcagttacattatcatatcc
tttctggtagtggtgaacatgtacatcgctgtgattttggagaactttggtgttgctact
gaagaaagtgctgaacccttgagtgaggatgactttgagatgttctatgaagtctgggag
aagtttgatcctgatgcaacacagttcatggaattcgagaaattgtctgattttgcagca
gcacttgagcctcctcttcatctacccaaaccaaacaaagtccagcttattgcaatggat
ctgcccatggtgagcggtgacagaattcactgccttgacatcttgtttgctttcacaaag
cgtgtcttgggggaaagtggggagatggatgccctcagaatacagatggaagatcggttt
atggcatccaatccttctaaagcttcctatgaaccaattacaactacattgaaacgaaaa
caagaggaagtatctgctgtcatcattcagcgtgcttacagacgtcaccttttaaaacga
acagtaaaacaagcttcctttatctataacaaaaataaaactgaaggtggggctggtcag
ggtatgaaagatgaaatccttattgacaagttaaacgaaaactcatttacagagaaaaca
gatataaccgcatcaacagcagtttgtccaccttcttatgatcgtgtaatgaggccagtc
aaagaaaagcacgaaaaggaagagaaagatggtcaaaaataa
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