Aphelocoma coerulescens (scrub jay): 138113371
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Entry
138113371 CDS
T10543
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04836
voltage-gated sodium channel type III alpha
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
acoe04040
]
138113371
Ion channels [BR:
acoe04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
138113371
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Motif
Other DBs
NCBI-GeneID:
138113371
NCBI-ProteinID:
XP_068877644
LinkDB
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Position
7:21265712..21316637
Genome browser
AA seq
2019 aa
AA seq
DB search
MAQALLVPPGPESFRYFTRDSLAAIEKRSAEEKAKKPKQDHTDDDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPIRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFEINIISYFNSTM
NENGTFVNMTVSTFNWKDYIEDETHFYILEGQRDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQTTAAVAAASVASRDFSGVG
GLGELLESSSEASKLSSKSAKERRNRRKKRRQKEMSEAEDKGDIDKFPKSESEDSIRRTS
FRFSTEGSQLTYEKRLTSPHQSLLSIRGSLFSPRRNSKTSIFSFRGHAKDIGSENDFADD
EHSTLEDNESRRDSLFVPNRHGERRNSNISQASVSSRMIPALPVNGKMHSTVDCNGVVSL
VGGPSTLTSPTGQLIPEVIISKSVIIGTTTETEIRKRRLSSYQISMEMLEESAARQRAMS
IASILTNTMEELEESRQKCPPCWYRFANTFLIWDCWSPWLKVKHVVNLVVMDPFVDLAIT
ICIVLNTLFMAMEHYPMTEQFSSVLSVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIF
DGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTL
VLAIIVFIFAVVGMQLFGKSYKECVCKISSDCVLPRWHMHDFFHSFLIVFRVLCGEWIET
MWDCMEVAGQTMCLIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIA
VARIQKGIDYVKKKIQEFIRKAFVRKQKSLEEIKALEELNNKKDSCISNHTAVEISKDLN
YLKDGNGTTSGVGTGSSVEKYVIDENDYMSFINNPGLTVTVPIALGESDFENLNTEEFSS
ESDMEESKQKLNASSSSEGSTVDIAPPGEGEQAEIESEEALEPEACFTEGCVQKFPCCQV
SIEDGKGKTWWNLRKTCYSIVEHNWFETFIVFMILVSSGALAFEDIYIEQRKTIKTMLEY
ADKVFTYIFILEMLLKWVAYGFQIYFTNAWCWLDFLIVDVSLVSLIANALGYSELGAIKS
LRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFY
HCVNTTTGEMFDISDVNNYTQCAELIKSNQSARWKNVKVNFDNVGAGYLALLQVATFKGW
MDIMYAAVDSRDVKDQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPVNKFQGMIFDFVTKQVFDISIMILICLN
MVTMMVETDDQSKEMETILSRINLVFIVLFTGEFVLKLISLRHYYFTIGWNIFDFVVVIL
SIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPIL
NSGEPDCDPHKDHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATE
ESAEPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDL
PMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQ
EEVSAVIIQRAYRRHLLRLKVKQVSSLYNRNKNKEGDGHIIKEIIINKLKGNSTPEKTDE
SSTTSPPSYDSVTKPDKEKYEKDKAEKNYKGKDIRENKK
NT seq
6060 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcactgctggtaccacctggacctgaaagcttccgctattttactagagat
tctctcgcagctattgaaaaacgttctgcagaagaaaaagctaaaaagcccaagcaagac
catacagatgatgatgatgaaaatggtccaaaaccaaacagtgacttggaggcaggaaag
acactgccatttatttatggtgacatacctccaggaatggtatctgaacctttggaagac
ctggacccatattatatcaataaaaaaactttcatagtattgaataagggaaaagcaatt
ttccgtttcagtgccacatctgccttgtatattttaactccttttaatcccatcagaaaa
attgctatcaagattttggtacattcattattcagcatgcttatcatgtgcacaattttg
accaactgtgtatttatgaccatgagtaaccctccagattggacaaagaatgtagagtac
actttcactggaatttatacctttgaatcacttatcaaaattcttgcaaggggattctgc
ttagaaggttttacttttctgcgagacccatggaactggcttgacttcagtgtcatttta
atggcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtattgagagctttgaaaactatttctgtaattccaggcctgaagactattgtgggagcc
ctgattcagtctgtgaagaagctctcagatgtgatgatcctgactgtgttttgtctgagt
gtatttgcactgatagggctgcagctgttcatgggcaacttgaggaataaatgcctacag
tggcctccagacaattctacttttgaaataaacattatttcctactttaacagcacaatg
aatgaaaatggtacatttgttaacatgacagtgagcacgtttaactggaaggattacatt
gaggatgaaactcatttttacatcttggaaggacaaagagatgccctactttgtggtaat
agctctgatgcagggcaatgcccagaaggatatatatgtgtgaaagctggtagaaacccc
aactatggctacacaagttttgacaccttcagttgggcttttttgtctctgtttcggcta
atgactcaggacttctgggaaaacctctatcagctgactcttcgtgctgctgggaagaca
tacatgatcttttttgttctggtgatttttctgggctctttctacctgatcaacctgatc
ctggctgtggtcgccatggcctacgaagagcagaatcaagcaacaatggaagaagcagag
cagaaagaggcagaatttcaacagatgctggaacaactaaagaagcaacaggaagaagct
cagacaacagcagcagtagcagcggcatcagttgcatcaagagatttcagtggtgtaggg
ggattaggagaactcttggaaagctcttcagaagcatcaaagctgagctcaaagagtgct
aaagaaagaagaaacagaaggaagaaaagaagacagaaagaaatgtctgaagcagaggac
aaaggagatatcgataagttccccaagtctgagtcagaagacagtatcagaaggacaagt
ttccgcttctccactgaaggaagtcaactgacatatgaaaaaaggctcacttctcctcac
cagtctttgttaagcattcgtggttctctgttctcaccgaggcgcaacagcaaaaccagc
attttcagtttcagaggtcatgcaaaggatataggatctgaaaatgattttgctgatgat
gaacatagcactcttgaagacaatgagagcagaagagattctctctttgtcccaaatcga
catggagaaaggcgcaacagtaacattagtcaggcgagtgtgtcatctagaatgatacca
gcccttccagtaaatgggaagatgcacagcactgtggattgcaatggagtggtttccttg
gttggaggaccttcaactctaacttcacctactggtcagcttataccagaggtaattata
agtaaatcagtaattattggcaccactacagaaacagaaataaggaaaagaagactgagt
tcatatcaaatttccatggaaatgctggaagagtctgctgcaagacaaagagcaatgagc
atagccagcatacttacaaatacaatggaagagcttgaagaatccagacagaaatgccca
ccatgctggtacagatttgcaaatactttcttgatctgggattgctggagtccatggtta
aaagtaaagcatgtcgtcaatttagttgtgatggatccatttgttgatcttgctataact
atttgcattgttttaaacaccttgtttatggccatggaacattacccaatgacagaacag
tttagcagtgtcctttctgtggggaacctggtattcactgggatatttacagcagaaatg
gtactaaagattattgccatggatccttattattatttccaagaaggctggaatattttt
gatggtattatcgttagccttagtttaatggagcttggtcttgcaaatgttgaaggatta
tctgttcttcggtcattcagattgcttcgagttttcaaattggcaaaatcttggccaact
ctaaatatgctgattaagattattggcaactcagtgggagctctggggaatctgaccctg
gtgctggccatcattgtgttcattttcgctgtggttgggatgcagctgtttggcaaaagc
tacaaggaatgtgtctgcaagatctccagtgactgtgtgcttcctcgctggcacatgcat
gactttttccactctttcctgattgtattccgagtgctgtgtggagaatggatagaaacg
atgtgggactgcatggaggttgcaggccaaaccatgtgccttattgttttcatgctggtc
atggtgattggaaacctagtggtattgaacctatttctggccttgctgctgagctcattt
agttcagacaaccttgctgctacagacgatgataatgaaatgaacaatctccagattgct
gtggcaaggattcagaaaggcatagattatgttaaaaaaaagatacaggagttcatccga
aaagccttcgttagaaagcagaaatctttagaggaaatcaaagcacttgaagagctaaac
aacaagaaagacagctgcatttccaatcatactgctgttgaaataagtaaagatctgaat
tatcttaaagacgggaatggaaccaccagtggtgtaggcacaggcagcagtgtggaaaaa
tacgtaattgatgaaaatgattatatgtcattcataaacaacccaggcctcactgtaaca
gtgcccattgcacttggagaatcagattttgaaaatttaaatacagaagaatttagcagc
gaatctgatatggaagaaagcaaacagaaactaaatgcatcaagctcatcagaaggcagc
actgttgatattgctcctcctggagagggcgagcaagcagaaattgaaagtgaagaagct
cttgaaccagaagcctgttttaccgaaggttgtgtgcagaaatttccatgttgtcaagta
agtatagaggatggcaaaggaaaaacttggtggaatcttagaaaaacctgctacagcata
gttgaacacaactggtttgagactttcattgtattcatgattctcgtcagcagtggagca
ctagcttttgaagacatatatattgaacaacgcaaaactatcaagaccatgctggagtat
gctgacaaagtttttacgtatattttcattttggaaatgcttttaaaatgggtagcatat
ggttttcaaatatattttactaatgcctggtgctggctggacttcctgattgttgatgtc
tcattggttagtttaatagccaatgctctgggctattctgaacttggtgccattaaatcg
ctgcggacattaagagctttaagacctttaagagccttgtcacgatttgaaggaatgagg
gtggttgtaaatgctcttgtaggagcaatcccatctatcatgaatgtattgctggtatgt
cttatattctggctaatcttcagcatcatgggagtaaatctgtttgctggaaaattctat
cactgtgtcaacaccacaactggtgagatgtttgatatcagtgatgtcaacaattatact
cagtgtgcagaactcataaaaagcaatcaaagtgcccgatggaagaatgtgaaagtaaac
tttgacaatgtaggagctggatatcttgctctgcttcaagtagctactttcaaaggatgg
atggatattatgtatgctgctgttgattcacgagatgtaaaagatcaacctaagtatgag
gacaacttgtacatgtatctctattttgtcatctttatcatatttggatcattttttacc
ttgaaccttttcattggtgttattatagacaacttcaaccaacaaaaaaagaagtttgga
ggtcaagatatatttatgacagaagaacagaagaaatattacaacgcaatgaaaaaactg
ggatccaaaaagccacagaaacctataccgaggccagtgaacaaattccaaggcatgatc
tttgattttgtaaccaaacaagtatttgacatcagcatcatgatactcatctgccttaac
atggtcacaatgatggtagaaacagatgatcagagtaaagaaatggaaacaattttatcc
cggattaacttggtgttcattgtccttttcactggagaatttgtcttgaaattaatttca
cttcgccattactacttcactataggctggaatatttttgattttgtggttgtgattctc
tccatagtaggtatgttcttagctgagatgattgagaagtactttgtatcccccacacta
ttcagagtcatccgacttgccagaatcggtcgaatcctgcgcctcattaaaggcgctaag
ggaatccgcactctgctttttgctctgatgatgtctcttcctgctttgttcaacattggg
ctgctgctcttcctggtcatgttcatctatgcgatatttggcatgtccaactttgcctat
gtcaagagggaagttgggattgatgacatgttcaactttgaaacgtttggcaacagcatg
atctgcctgtttcagatcaccacgtccgctggctgggatggtttgctcgccccgatcctt
aacagtggagagccagactgtgacccccataaagatcatccagggagttctgtgaaaggt
gactgtggcaacccttctgttgggattttcttctttgtcagctacattatcatatccttt
ctggtagtggtgaacatgtacatcgctgtgattttggagaacttcagtgttgctactgaa
gaaagtgctgaacccttgagcgaggacgactttgagatgttctatgaagtctgggagaag
tttgatcctgatgcaacacaattcatagaatatagtaaattatcagattttgcagcttca
ttagatccacctcttctcatagcaaaaccaaacaaagtccagcttattgcaatggatctg
cccatggtgagcggtgacagaattcactgccttgacatcttgtttgctttcacaaagcgt
gtcttgggggaaagtggggagatggacgccctcagaatacagatggaagatcggtttatg
gcagccaatccttctaaagtctcctatgaaccaattacaaccacattgaaacgaaaacag
gaggaggtgtctgctgtcatcattcagcgtgcttacagacgtcaccttttaaggctaaaa
gttaaacaggtgtctagtctatataatagaaataaaaacaaagagggagatggacacatt
ataaaagagataattattaataaactaaaagggaactccactccagaaaaaacagatgag
agttctacaacttccccaccctcttatgacagtgtaacaaagccagacaaagaaaaatat
gaaaaagataaagcagaaaagaactacaaaggtaaagacatcagggaaaataaaaaataa
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