Aphelocoma coerulescens (scrub jay): 138113541
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Entry
138113541 CDS
T10543
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138113541 (PMS1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
138113541 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
HMG_WDHD1
HMG_box_5
CHDNT
Motif
Other DBs
NCBI-GeneID:
138113541
NCBI-ProteinID:
XP_068878048
LinkDB
All DBs
Position
7:8101549..8144081
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AA seq
933 aa
AA seq
DB search
MKQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDIKLENYGFSKIEVRDNGSG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSVSEVLVTTKTAADDFSIQ
YALNSNGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCEYPEINLSGFL
PKAESDSSLTSLSSSERSFIFINNRPVLQKEILKLIRQYYSQMTQKDCTRLYPVFFLNIT
VPASAVDVNITPDKTQVLLQYKESVLLAVENVLKSLYGPLPATVPGESNKTDVTSEDMFV
HRTDQTDVAVNEMGPSGNDELHAHTSFLSLSNDVQNCQAGKNAEICLNHQPFSGDNVHSH
LDKREVSKSDAFPDSSLNLLHEEEQNGQNMADIQSNSIPVDPESKKANEHLLSSDNTDEI
DKNEEALVPKDLPEISADSWSMGSGFKDSLGDKLEPVKILIPGVGGTTNKQNEYTGEKSS
DPQISSPSIKKKNVISEKFGHVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDNPKTSM
NDILLTIEEQWKNLSEEEKKNYEIKATKDQERYNREVKKANAQPIHRPAKEAEKHKPKLK
SSASDQQKLDKIFHDQIEKKGKLEQPVKIVPVPFSLSSCRRHLQRQEKNASDEHELFLIR
RQSFPDVWILATEKNLKLLNPYRLEEALLFKRLLMNHKLPVEKLDNPIVLTDSLLGGSQY
MAALHKMQKNYQSFHGSGYLSDPRLVANGFQIKVIEGVSATESHLEIEGMANCLPYFGIS
DLKEILNAVVNRNAKEVYECRPLKVVNYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEVDKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggagagacaattcggctcctttcaagttctcaggtgattacttca
gttgtcagcgtggtgaaggagctgatagaaaattccttggatgccagtgctacaggcatt
gatattaaactggagaactacgggtttagcaaaatagaagtaagagacaatggcagtgga
atcaaggttgatgatgttccagttatggcaattaaacactacacctcaaaaatcagctct
tctgaggacctcgaaaggctgacaacgtatggtttccgtggggaagctttgggatcgatt
tgcagtgtatcagaggttttggtcacaacaaagacagctgctgatgatttcagcattcag
tacgctttgaatagcaacggacatgtaacttctaaaaagccttcccatcttgggcaaggt
actacagtaacagtcctaaatttgtttaagaatcttcctgtaagaaagcagttttactca
acaaatagaaaatgtaaggaagaactgaaaaaagtccaagatctactgacagcatatggt
atcataaaaccagacctgaggataacattaacacataataaggcagttatttggcagaag
accagggtgtcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgcgaatatcctgagataaatctttctggatttctc
ccaaaagccgagtcagacagttctttgacaagcctttcaagctcagaaaggagtttcatt
tttataaataatcgcccagttcttcagaaggaaatactgaagttaattcgacagtactac
agtcagatgacacaaaaggactgtactcgtttataccctgttttctttttgaatattact
gtacctgcttctgctgtggatgtgaatataacacctgataaaacacaagttttgctgcaa
tataaggaatctgtcttacttgcagttgaaaacgtgttgaaatcactgtatgggccacta
cctgccacagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaaacagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctacatgctcatacttcattcctttcactcagcaatgatgtgcaaaactgtcaagcagga
aaaaacgcagagatctgcttaaatcatcagccatttagtggtgataatgtacacagtcac
ctggacaaaagagaggtttctaagagtgatgcctttccagacagttccttaaatttattg
catgaggaggaacagaatggacagaatatggctgatattcaaagtaatagtattcctgtg
gaccccgagtctaaaaaagccaatgagcatcttttgagctctgataatactgatgaaata
gataaaaatgaggaagccttagtccctaaggacttacctgaaatctctgctgatagttgg
agtatgggaagtggatttaaagacagtctgggagacaagctggaaccagttaagattttg
attcctggagttggagggacaactaataagcaaaatgaatacactggtgaaaaaagcagt
gatccacaaatctcaagtccaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
catgtgacagcttatgacttaattaatagcagaataataaagaaaccaaagtctgcgttt
gaatttttcacacacgaatgtcgtccaaaattgataaatgataatccaaagaccagcatg
aatgacatcctgctgacaattgaagagcagtggaagaatttgagtgaagaggaaaaaaag
aattatgaaataaaagccactaaggaccaggaacgatacaacagagaggtcaagaaagcc
aatgcacagccgatacaccgaccagcaaaggaagcagaaaaacacaaacccaagctaaag
agttctgcatctgaccagcagaagcttgacaagatattccatgaccagattgaaaagaag
gggaaactggaacagcctgtgaaaattgtcccagtgcctttttctctgagttcctgtaga
cgtcaccttcagagacaagagaaaaatgcttccgatgaacatgagcttttcctgatccgt
cgtcagagttttcctgatgtgtggatacttgctactgaaaaaaatctaaagttgctgaat
ccatacagattggaagaggccctgctatttaagagactactgatgaaccataagcttcca
gtagagaaactggacaatccaattgtgttaacggacagtcttcttggtggatctcagtat
atggcagctcttcataagatgcagaagaattaccagagtttccatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgatagaaggtgtttcggct
acagaaagtcatcttgaaatagaagggatggcaaattgtctgccatattttggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtatatgaatgt
aggcctctcaaagtggtaaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtacaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgcgttcatggtcgtcctttttttcatcacttaacagatatt
ccagaagttgacaagcacaactccatggaaattattcagtaa
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