Aphelocoma coerulescens (scrub jay): 138113832
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Entry
138113832 CDS
T10543
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acoe03000
]
138113832 (RC3H1)
04121 Ubiquitin system [BR:
acoe04121
]
138113832 (RC3H1)
Transcription factors [BR:
acoe03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
138113832 (RC3H1)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138113832 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
138113832
NCBI-ProteinID:
XP_068878759
LinkDB
All DBs
Position
8:complement(5751577..5826095)
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AA seq
1123 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLSNRKTSALPNGIVSTGSTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPADLPSVSVTKQLQMVPRGSQLYNAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSVPEPGTPYLEHYGPYLPERVVSPQYPQPQGY
PTLAQPMYPPHYDGRRMYPPMQPYQREDVVRGSPVPIDIPQTAVPLYVPESRDRYQQTEA
YCPVAPHLGPIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANVDSKAMR
EQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGAATKSI
ISDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVASHGKQLPSAEREQQLRME
LQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELH
QVEREIGKRTRELSMESQSSLDMKNKLGSTKQTENGQLEPQNKVPAEDLALTFSDVPNGS
ALAQENIGLLSNNMASLSLSEDPEGGGDSHDSQRAGVTPTSAP
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagact
ttcgacgaaacaatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgtccctttgaccagaccactatcaacactgac
attgaactccttcctgtgaactcagccttgctgcaacttgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattggcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaagggcggatcagagccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattctccagcatcaaaaccctcagcagctctcc
tccaacctctgggctgcagtgagagccagggggtgccagttccttgggccagcaatgcaa
gaggaggctttaaaactggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagagactggagccgcgattccctcaggcttccaaaact
agcattgggcatgttgtccagctcctttacagagcctcgtgcttcaaggtgaccaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacttacgaagctctgaga
agggaacacgattcccagatagttcaaatagctatggaagcaggtttgcgcattgcacca
gaccagtggtcctcgctgttatatggagaccagtctcacaaatcccacatgcagagtatc
attgacaagttgcagaccccagcctcctttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagaactcctg
gcaaatattgatcccagtccagatgctccgcctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcaacaacagccccctcagcacagcaagtacaagacatacatgtgccga
gacatgaagcagagaggaggatgtccccgaggggccagctgcaccttcgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtcttgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggatttgtccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacgcaactaatttctcgagggactgactccagttatgaaactgccctg
aagccagggaagatggaccatctgagtagcagcgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctctatttctgccttgccagtgaaccctcatcctgtgcctgct
cgggcgccagcagatctgccctcagtgtctgtcaccaagcagttgcagatggtacctcga
gggtctcagttgtacaatgcacaacaagcagatatgttttatcaagaccccagaggagct
gccccatcgtttgagccagcaccctaccaacaaggagtgtactatcccacccagtccatg
tctcgctttgtccgacctcctccatcagtgccagagccgggcacaccatacttggagcac
tatggaccatacctgccagagcgtgtggtgagcccacagtacccacagccacaggggtat
ccgaccctggcacagcccatgtacccaccacattatgatggccgccgcatgtaccccccc
atgcagccctaccagcgggaagatgtggtgcggggcagcccagtgcccatcgacatccca
caaacggctgtgcccctctacgtacctgagtccagagacagataccagcaaacagaggct
tattgcccagtggctccacatctcggcccgatcagaccttcgtgccacaggcctcatccc
agcctggatgagcttcaccgacgaaggaaagagatcatggcccagctagaagagaggaag
gtgatttctccgcctccttttgcaccatcaccaacattgcctcatccttttcactcagag
gagtacttggatgaagacctgaaagtagctgggaaatacaaaggaaatgactacagccag
tactctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaaccc
aaagatgttgtggcagcaaggagtgtggagatggcgaatgtggatagtaaagccatgcgt
gagcagcggctggacatgcagcgacgagcggccgagacaggggatgatgacctcattcca
tttggagaccgaccaactgtttcaagatttggggccatctctcgtacttccaaagccatg
taccagaactctgggcccatgcaggccatggcagttcagggagctgccactaaatccatc
atttcagactacagtccttatggaacccatggtggctggggaggctctccatattctcct
catcaaaatataccttctcagggacgtttcaatgacagggaaagactctccatgtcggat
gtggctagtcatgggaagcagttgccctcagctgaacgagagcagcagttgcgcatggaa
ctgcagcaagttgaccatcagatcagccagcagacacaaatgcggggactggaggctgtt
agtaacaggctgctgttgcagagagaggcgactaccctggcaggccaaccacagccccca
cccccacctcccaagtggcctgggatgatctcaagtgaacagctgagcttggagctacac
caggtggaaagggaaattgggaagagaacccgtgagctgagcatggagagccagtcttca
ctggatatgaaaaacaagctgggcagcactaaacagacagaaaatggacaattagaacca
caaaacaaggttccagctgaggaccttgcactgacattcagtgatgttccgaatggatca
gctttggcccaagagaacattggcctcctgtcaaacaatatggcatctctcagcctgtca
gaggaccccgagggaggaggagatagccatgattcccagcgagcgggagtaacacccaca
tctgctccatga
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