Aphelocoma coerulescens (scrub jay): 138114093
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Entry
138114093 CDS
T10543
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138114093 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138114093 (SMG7)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138114093 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
138114093 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
138114093
NCBI-ProteinID:
XP_068879304
LinkDB
All DBs
Position
8:complement(5463590..5516645)
Genome browser
AA seq
1192 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTRWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHITVI
NLFQLHHLRDFSNETEQHNYSQDEQLCWTQLLALFMSFLGVLCKCPLQNDYQEDSGAAYP
LPAVKVSMDWLKLRPSVFQEAVVDERRYIWPWLISLLNSFQPHEEDLSSNNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQAITGDKEGQQRRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLLFVTEIPELLLEDPSEAKESLALQETSMAEPLCADGSPGLKSVLSSGRTLNNSCDAG
EKPMVTFKENIKPREMNREQGRIYPPKDVARERRDFSKGIVANKNDGKKENNKRKNETKK
CGLDKMQEAGKQNVAVQVKSQTEMRKTPVSEARKTPVTQTPSQASSSQFIPIHHPGAFPP
LPSRPGFPPPTYVVPPPVAFSMSTGYTFPGGVSVPGTFLQPTAHSPAGNQVQGGKQSHIP
YSQQRPSGPGPMTQGPQQTPPPSQQPLSSLPAQATAQSTSQLQVQALAQQQQHQSPTKAV
QGLGKSPPHHSGFQQYPQTDSSKQLWNPPQVQGSLGKIMPVKQPYYLQAQDPLKLFEQSL
QPPVMQQQPLEKKMKPFPMEPYNQNPSEVKVPEYYWDSSYGMTDNRVMTQQSNMDRRGKR
QGVFCSEQDAVSRMTFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLAS
LPGRSLFKSLLEKPSELMSQSSSFLSLSGFSLNQERYPNNSMFNEVYGKNMNTSTKTEVT
ASAAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFS
NFGPIGTPDSRDRRVTDRWKTDKPAMGGFGLDYLPATSSSSESSWHQSSTPSGTWTAQGP
PAMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgtgcgcgcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggtccagcagaagtctggacatccagacaggctctacaggacttatat
caaaaaatgctagtgactgatttggaatatgctttagataaaaaagtggagcaggacctt
tggaatcatgcctttaaaaatcagatcacgacgctccagggtcaggcgaaaaacagagca
aatccgaatcggagtgaagttcaggcgaacctttctctgtttttagaggcagctagtggc
ttctacacacagctgttacaggaactgtgcacagtttttaatgtagacctgccgtgccgt
gtgaagtcttcccagctggggatcattagcaataaacagacgcacaccagcaccattgtg
aagccgcagtccagctcctgctcctacatctgccagcactgccttgtccacctgggagat
attgctcgctataggaatcagaccagccaggcagagtcttactatagacacgcagctcag
cttgtcccttctaatggtcagccttataatcagttggctatcctagcttcttccaaagga
gaccacttgaccacaattttctactactgcagaagcattgctgtgaaatttcctttccca
gctgcctccactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcgatggagcgtgtctgacttcatcaaggcatttattaaatttcatggccatgtg
tacctgagtaagagcttggagaagctgagccctcttcgagaaaagctggaagaacagttc
aagaggttgttgttccagaaggccttcaactctcagcagttagtccatattactgtgatc
aacctgttccaactgcaccacctgcgagacttcagcaatgaaacggagcagcacaactac
agccaggatgagcagctctgctggacacagctcctggctctcttcatgtcgtttcttgga
gttctgtgcaagtgtcctttacaaaacgactaccaggaggactctggggctgcatatcct
cttccagctgtgaaggtttcgatggactggctgaaacttaggcccagtgttttccaggag
gcagtggttgatgaaagacggtacatatggccctggctgatctctcttctaaatagtttc
cagcctcatgaagaagatctatccagtaataatgcaaccccccttccagaagaatttgag
ttgcaaggattcctggctctgaggccctcgttcaggaacttggatttttccaaaggccac
caggcaattacaggggataaagaagggcagcaacgtcggatacggcagcagcgcctgatc
ttcacaggcaaatggattgctgataaccagccaaggttgattcaatgtgagaatgaggta
ggaaagctgttgtttgtgacagaaatcccagagctcctactggaggaccctagtgaagcc
aaagagagtctcgccttgcaggagacatccatggcagagccactgtgtgctgatgggagc
cctggactcaaatcagtgctgtcctctggcagaactctgaacaacagctgtgatgcagga
gaaaaaccgatggtcaccttcaaagagaacatcaagccccgggagatgaacagagaacaa
gggcgcatctaccccccaaaggacgtagcgagggagagacgggactttagcaaaggaata
gtagcaaataagaatgatgggaagaaagaaaacaataaaagaaagaatgagactaagaaa
tgtggcttggataaaatgcaggaagcaggaaagcagaatgtggcagttcaggtgaaatcc
cagacggagatgaggaagactccggtgtcagaagccaggaaaacacctgtaactcagact
ccaagtcaggccagcagttcccagttcatccctattcatcacccaggagccttccctccc
cttcctagccggccaggatttcctcctccaacctacgttgtcccccctcctgtggctttc
tccatgagcacggggtataccttcccgggtggtgtttctgtcccaggaaccttcctccag
cccacagctcactcgcctgcaggaaaccaggtgcaaggtgggaaacagtcccacattcct
tacagccagcagcggccctctggaccagggccaatgacccagggacctcagcaaacacca
cctccttcccagcaacccctctcatctttaccagctcaggcaacagcacagtccacaagc
cagttacaggtccaagctctggcccagcagcagcagcaccagtcccccacgaaagctgtg
caaggcctggggaagagcccgccacaccactccggattccagcagtatccacagacagac
tcatcgaagcagctctggaacccccctcaagtccaaggctccctggggaagatcatgcct
gtaaagcagccctattacctgcaggcccaggaccctctcaaactctttgaacagtcatta
cagcctcctgtcatgcaacagcaaccgctggagaaaaaaatgaagcctttcccaatggag
ccatataaccagaacccctcagaagtcaaggtgccagagtattactgggactcttcctat
ggcatgactgacaacagggtgatgacccagcagtcaaacatggaccgcagggggaagcgg
cagggagtcttctgctctgagcaggatgctgtctccaggatgacctttgaggaccccaag
agctcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaggaggaa
gagctgattttctctaatcctcctgatctttacccagctctgctggggcctctcgcctct
cttcctggacgaagcctctttaagtccctgctggaaaaaccatcagaattgatgtctcag
tcatcatctttcctgtccctcagtggcttttctctaaatcaggaaagatatccgaacaac
agcatgttcaatgaggtatatggaaaaaacatgaataccagcacaaaaacagaagtcacc
gcttcagctgcccatcaggagacttcactctattctctctttgaagggactccgtggtct
ccatcccttccagccagctcagatcattcaacaccagccagccagtctcctcactcctcc
aaccccagcagcttgccaagctcccctccaacccataaccacaattctgttcctttctcc
aactttggacccattgggactccagacagcagagaccggagagtcacagaccgctggaaa
acagataagccagcaatgggagggtttggtctggactatctcccagcaacgtcgtcttct
tcggagagcagctggcaccagtccagcactcctagtggtacctggacagcccaaggccct
cctgccatggaggactcctcagctgtgcttatggagagcctgaagtccatctggtccagt
tctatgatgcaccctggcccctcggctctggagcagctgttgatgcagcagaagcagaag
cagcagcgcggacaaggcaccatgaacccgccgcattga
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