Aphelocoma coerulescens (scrub jay): 138114532
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Entry
138114532 CDS
T10543
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04136
Autophagy - other
acoe04140
Autophagy - animal
acoe04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138114532 (ATG16L1)
04136 Autophagy - other
138114532 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
138114532 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoe04131
]
138114532 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
acoe03029
]
138114532 (ATG16L1)
Membrane trafficking [BR:
acoe04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
138114532 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
138114532 (ATG16L1)
Mitochondrial biogenesis [BR:
acoe03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
138114532 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_ACSF4
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_WDR41
Beta-prop_VPS8
Tricorn_2nd
Beta-prop_SPT8
INO80F
ZapB
HTH_6
PALB2_WD40
DUF8181
Lipoprotein_6
Tricorn_N
Peptidase_M15_4
YicC-like_N
AP5B1_middle
HEF_HK
V_ATPase_I
DUF6383
CCDC93_CC
WHD_CYT4
Motif
Other DBs
NCBI-GeneID:
138114532
NCBI-ProteinID:
XP_068880156
LinkDB
All DBs
Position
9:complement(429018..450281)
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHESSPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVPAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTA
RRRSVSSFPAPQDNVEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSSINAV
AWSPAGAHVVSVDKGNKAVLWSEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctacgcgccgctgggttccccccctggaagcggcacatcgcggaggag
ctacggcggcgggaccggctgcagcgccaggctttcgaggagatcatcgcccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagcagacatgagtccagcccaggacatgatggcacatggaacgatgca
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggcgagctggcccagtctgtaattgatctgaacaaccaaatgcagcagaaa
gacaaagagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acgctgaaagatgaatatgatgctctccagatcaccttcaatgccttggaggagaaacta
aggaaaactactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaagagcccttgcctgttgaacccagggatgatgat
atcgaagtgcttgcggatgaaacctctgacacagctgaggaaacttctccggtgccagct
gtcagccggacatccagtaagcgactctcccagccagctggaggccttctggactctatc
agtaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctgtgtcctcattccctgcaccccaggataatgtagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggg
gaggtgaatgcagtgcagttcagccctggctcccggttactagcaacaggaggcatggac
cggagggttaagctgtgggaagtcttgggagataggtgtgagcccaaaggttccctctct
ggcagtaatgctgggattacaagcatagaatttgatagtgctggttcttacctcttagca
gcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcacacc
ctgacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcacgaccggaccctcaagctctgggacctccgcagcaaagtttgtata
aaaacagtgtttgcaggatctagctgcaatgacattgtgtgtactgagcagtgtgtaatg
agtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtaaaa
gaactggagctgcttggaagaatcacagctctggacctgaacccagagcgaacagagctt
ctgacctgttcccgtgatgatctactcaagatcatcgatctgcgggtcagtgctgtcaag
cagacattcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggccctctatgtttggaatgtg
cttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtc
gcgtggtcaccagcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctg
tggtctgagttttga
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