KEGG   Aphelocoma coerulescens (scrub jay): 138114548
Entry
138114548         CDS       T10543                                 
Symbol
POLR2H
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
acoe  Aphelocoma coerulescens (scrub jay)
Pathway
acoe03020  RNA polymerase
acoe03420  Nucleotide excision repair
acoe04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:acoe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    138114548 (POLR2H)
  09124 Replication and repair
   03420 Nucleotide excision repair
    138114548 (POLR2H)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    138114548 (POLR2H)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acoe03021]
    138114548 (POLR2H)
   03400 DNA repair and recombination proteins [BR:acoe03400]
    138114548 (POLR2H)
Transcription machinery [BR:acoe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     138114548 (POLR2H)
  RNA polymerase III system
   RNA polymerase III
     138114548 (POLR2H)
  RNA polymerase I system
   RNA polymerase I
     138114548 (POLR2H)
DNA repair and recombination proteins [BR:acoe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      138114548 (POLR2H)
SSDB
Motif
Pfam: RNA_pol_Rpb8 RNA_pol_RpbG
Other DBs
NCBI-GeneID: 138114548
NCBI-ProteinID: XP_068880210
LinkDB
Position
9:complement(18224069..18226468)
AA seq 150 aa
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
NT seq 453 nt   +upstreamnt  +downstreamnt
atggctgggatcctcttcgaggatatcttcgacgtgaaggacatcgacccagaaggcaag
aagttcgaccgcgtgtcgcgcctgcactgcgagagcgagtccttcaagatggatctcatc
ctggacgtgaacatccagatctaccccgtggacctcggggacaaattccgcctggtcatc
gccagcaccttgtatgaggacggcaccctagatgatggcgagtacaaccccacagacgac
cggccgtccagggcagaccagtttgagtacgtgatgtacggcaaggtgtaccggatcgag
ggggacgagacctccacggaggcggccacacgcctctctgcctacgtgtcctacgggggc
ctgctcatgcggctgcagggagacgcaaacaacctgcatgggtttgaggtggactctcgc
gtttacctgctgatgaagaagttggccttctag

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