Aphelocoma coerulescens (scrub jay): 138116440
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Entry
138116440 CDS
T10543
Symbol
HCN4
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
acoe04040
]
138116440 (HCN4)
Ion channels [BR:
acoe04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
138116440 (HCN4)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
138116440
NCBI-ProteinID:
XP_068881878
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All DBs
Position
10:19878614..19970212
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AA seq
1209 aa
AA seq
DB search
MDKLPPSMRKRLYSLPQQIGPKASIMDEEDDSDKDTRRKSIRLKPLPSPSAGSTRALGGD
PGRGGDPGLLETEAGGKGAKTSTNGDCRRFKGSLSSLTSRHLHDAAEEKRLIGGEGEPAS
PGEDKSPPGSGELEQGLPVPPPPASPPEPQQPPPRACSSTSIKVEGAGGCDQITPDEEQR
LGQAGFMQRQFGAMLQPGVNKFSLRMFGSQKAVEREQERVKSAGFWIIHPYSDFRFYWDL
TMLLLMVGNLIIIPVGITFFKDENTTPWIVFNVVSDTFFLIDLVLNFRTGIVVEDNTEII
LDPQRIKMKYLKSWFVVDFISSIPVDYIFLIVETRIDSEVYKTARALRIVRFTKILSLLR
LLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVNLIGMMLLLCHWDGCLQFLVPMLQDFPD
DCWVSLNRMVNDSWGKQYSYALFKAMSHMLCIGYGQQAPVGMSDVWLTMLSMIVGATCYA
MFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQRIHDYYEHRYQGKMFDEE
SILGELSEPLREEIINFNCRKLVASMPLFANADPNFVTSMLTKLKFEVFQPGDYIIREGT
IGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVD
NFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHKVQHDLNSGVFNYQENEIIQQIVQ
HDREMAHCAHNVQAAAAAASTPTPVIWTPLIQAPLQAAAATTSVAIALTHHPRLPTAIFR
PPVSVLGSLGQQPSQTPRQLKRFQSLIPSTGPSAVGSPSSTPSQLHTPGAETPSSSSFHI
QQLAGFSAAAGLGQFQVGSPPGGSGQPGPSSTSSVGLSQFHNAPSGSPLGTAQPLQQQQP
QQQQQQQQQPPALSSSGFGHFQQATAGSPSTSLTQLSSNSPPSLLNQFQPSTRPLQGGQS
QQLSGSGTLVGMNHFQHPPSSNSPSSSLSQLAQASGGPSAALCQTHPSALGSLTGTIAQL
HQERPPFASASPLQQPGVASPCYTPSGLSPPSQSPVASRTFQCGPAGASGSQGSLLLPQP
ASPPAPPLPGRSALPPGRLNQDIKLISASQPSLPQELAQTLGHHSSPHSSRESVSSFSPF
PGGGSGLLGKPCSSIPGRVTLPRQMSSGSLPHPLVFGAGAAALAAGGRKESIVLTGDLEP
VRSKLPSNL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctgcccccctccatgcgcaagaggctctacagcctgccccagcagatcgga
cccaaggcgtcgatcatggacgaggaggatgacagcgacaaggacacccgcaggaaaagc
atcaggctcaagccactgccttcgccctctgctgggagcacccgggccctcgggggagac
cccggccgagggggggaccccggcctgctggagacggaggccggcggcaagggcgccaag
accagcaccaacggggactgccgccgcttcaaagggagcctgtcctcgctcaccagcagg
cacctccacgacgcggccgaggagaagcggctcatcggcggcgagggggagccggcctct
cccggggaggacaagagcccccccggcagcggggagctggagcaggggctgcccgtgccc
ccaccgcccgcctcccccccagagccccagcagccgcccccccgggcctgctcctcgacc
tccatcaaagtggagggagctggagggtgcgaccagatcaccccagatgaggagcagagg
ctgggccaggccggattcatgcagaggcagttcggggccatgctccagccgggggtcaac
aaattctccttgaggatgtttggcagccagaaggccgtggagagggagcaggaaagggtt
aagtctgccgggttctggatcatccatccctacagcgacttcaggttttactgggatctg
accatgctgctgctgatggttgggaacctgatcatcatccctgtgggcatcaccttcttc
aaggatgaaaacaccaccccgtggattgtcttcaacgtggtttcggacacgttcttcctc
atcgacctcgtcctcaacttccggacaggcatcgtggtggaggacaacactgagatcatc
ctggacccgcagaggatcaagatgaagtacctgaagagctggtttgtggtggattttatc
tcctccatccccgtggactacatcttcctgatcgtggagacgcgcatcgactctgaggtg
tacaagacggcgcgggccctgcgcatcgtgcgcttcaccaagatcctgagcctgctgcgc
ctgctgcgcctctcccgcctcatccgctacatccaccagtgggaggagatcttccacatg
acctacgacctggccagcgccgtggtgaggatcgtcaacctcatcgggatgatgctgctg
ctgtgccactgggacggctgcctgcagttcctggtgcccatgctgcaggacttccccgac
gactgctgggtgtccctcaaccgcatggtgaacgactcgtgggggaagcagtactcgtac
gccctgttcaaggccatgagccacatgctgtgcatcggctacgggcagcaggcgccggtg
gggatgtcggacgtgtggctcaccatgctcagcatgatcgtgggggccacctgctacgcc
atgttcatcggccacgccaccgccctcatccagtccctggactcctcgcgccgccagtac
caggagaagtacaagcaggtggagcagtacatgtccttccacaagctgcccgccgacatg
cggcagcgcatccacgactactacgagcaccgctaccagggcaagatgtttgatgaggag
agcatcctgggggagctgagcgagcccctgcgcgaggaaatcataaacttcaactgccgc
aagctggtggcctccatgcccctgtttgccaacgcagaccccaacttcgtgacgtccatg
ctgaccaagctgaagttcgaggtgttccagcccggggactacatcatccgggagggcacc
atcggcaagaagatgtacttcatccagcacggcgtggtcagcgtgctcaccaagggcaac
aaggagaccaagctggccgatggctcctacttcggagagatctgcctgctgacccgtggc
cggcgcacagccagcgtgcgtgccgacacctactgccgcctctactccctgtccgtggac
aacttcaacgaggtgctggaggagtaccccatgatgaggagagccttcgagaccgtggct
ctggacaggctggacaggattggcaagaagaactccatcctgctgcataaagtgcagcac
gacctcaactcgggggtgttcaactaccaggagaacgagatcatccagcagatcgtgcag
cacgaccgggagatggctcactgtgcccacaacgtgcaggccgccgccgccgccgcctcc
acgcccacgccggtcatctggacgccgctgatccaggccccgctgcaggccgctgccgcc
accacgtcggtggccatcgcgctgacccaccacccgcgcctgcccacggccatcttccgg
ccgcccgtgtccgtgctgggctccctgggccagcagcccagccagacccccaggcagctg
aagaggttccagtcgctcatcccgtccaccggcccctctgccgtgggctccccgtccagc
accccgtcccagctgcacacgccgggcgcagagaccccctcgtcctcgtccttccacatc
cagcagctcgccggcttctcggccgccgctggcctgggccagttccaggtgggatcccct
ccggggggctccggccagccggggccgagcagcacctcctcggtggggctgagccagttc
cacaatgcaccctcggggtcacccctcggcacggctcagcccctgcagcagcagcagccg
cagcagcaacagcagcagcagcagcagccgccagccctctccagcagtggatttgggcac
ttccagcaagccacggccggctccccatcaacatccctcacccagctctcctcaaactcc
ccccccagcctcctgaaccagttccagcccagcacgagaccactgcaggggggacagtcg
cagcagctctcgggcagtgggaccttggtggggatgaaccacttccaacaccctccttct
tccaactctccatcctccagcctcagccagctggcgcaggcctcgggcgggccgtccgca
gcgctgtgccaaacacatccaagtgctttaggatctctgactggaacgatagcccagctc
caccaagagcggcctcccttcgcctccgcgtccccgctgcagcagcccggcgtcgcctct
ccctgttacaccccttctggccttagtcctcccagtcagagcccggtggccagcagaact
ttccagtgcggccccgcgggggcctcgggctcccagggctcgctgctgctgccgcagccc
gccagccccccggccccgccgctgcccgggcgcagcgcgctgccgccgggccgcctcaac
caggacatcaagctgatctccgcgtcccagccctctctaccccaggagctggctcagacg
ctgggccaccacagctctcctcactcctctagagaatctgtttccagcttctcccctttc
cccggcggcgggagcgggctcctggggaagccgtgcagctccatccccgggcgggtgact
ctgccgcgccagatgtcctcaggttctctgccacacccgctggtgttcggggccggcgcc
gctgccctggccgcgggcgggcggaaggaatccatcgtgctcacgggggatctggagccc
gtcaggtccaaactgccctccaatttgtga
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