Aphelocoma coerulescens (scrub jay): 138117058
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Entry
138117058 CDS
T10543
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Transcription factors [BR:
acoe03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
138117058 (CTCF)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138117058 (CTCF)
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Ortholog
Paralog
Gene cluster
GFIT
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NCBI-GeneID:
138117058
NCBI-ProteinID:
XP_068883137
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Position
11:7271276..7306177
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AA seq
750 aa
AA seq
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MKRTNQSRQKCRSVKNINQEGEMEGEAVDAIVEESETFIKGKERKTYQRRREGGQEDDAC
HIPPNQADGSEVVQDVSSGVQMVMMDQLDPTLLQMKTEVMEGAVPQETEATVDDTQIITL
QVVNMEEQPINLGELQLVQVPVPVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTL
PLPEGFQVVKVGANGEVETLEQGELQPQEDPNWQKDPDYQPPAKKTKKNKKSKLRYTEEG
KDVDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRR
SNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELV
RHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHM
RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK
QHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHT
GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCS
GLDGGEGENGGETKKGKRGRKRKMRSKKEDSSDSEENAEPDLDDNEDEEETAVEIEAEPE
VEQEAPAPPPSKKRRGRPPGKAATQPKQSQPAAIIQVEDQNTGEIENIIVEVKKEPDAET
VEEEEEAQPAVVEAPNGDLTPEMILSMMDR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaacaaatcagtccaggcagaagtgcagaagcgtcaagaacataaatcaggaa
ggtgaaatggaaggtgaggcagttgacgctattgtggaggaatcagagactttcattaag
ggaaaagagaggaaaacctatcaaagacgccgtgaaggtgggcaagaggatgatgcttgt
catataccaccaaaccaagcagatggaagtgaagtggtgcaggatgtcagcagtggggtg
cagatggtgatgatggatcagctggatccaactcttcttcagatgaagaccgaagtaatg
gaaggtgcagtgcctcaagaaactgaggctactgtggatgacacacagatcataacactt
caggttgttaatatggaagagcagcctataaaccttggtgagcttcagctggtccaagta
cctgtaccagtgactgtacctgttgccaccacatctgtggaagaactgcagggagcttat
gaaaatgaggtttccaaaggaggcctgcaggagggagagcccatgatctgtcacaccctc
cctttaccagaaggtttccaagtagtgaaagtgggtgcaaatggtgaggtggagacactg
gaacaaggtgaacttcagccacaggaagatcccaattggcaaaaagatccagactatcag
ccaccagccaaaaaaacaaagaaaaacaaaaagagtaagcttcgctacactgaggaaggc
aaagatgtggatgtctctgtgtatgactttgaagaggagcagcaggagggtttgttgtcc
gaggttaatgcagaaaaggtggtgggcaatatgaagccaccaaaaccaacaaaaattaaa
aagaaaggtgtaaaaaagacattccagtgcgagctgtgcagttacacttgtccgcgtcgt
tccaacttggaccgccacatgaaaagccacactgatgaaagaccacacaagtgccatctc
tgtggcagggctttccggacagtcacattgctgaggaaccacctcaacactcacacaggt
actcgccctcacaagtgcccagactgcgacatggcctttgtgaccagtggagagttggtt
cggcatcgccgctacaaacacacccacgagaaaccattcaaatgttccatgtgtgactat
gccagtgtggaggttagcaaactgaaacgccacatccgttcgcacaccggagagcgcccg
ttccagtgcagcctgtgcagctatgccagcagggacacctacaaactgaagaggcacatg
aggacccactccggagagaagccatatgaatgttacatctgccatgctcgcttcactcag
agcggtaccatgaagatgcacattttgcagaagcacacggagaatgtggccaaattccac
tgtcctcactgtgatactgttatagcgagaaagagtgacctgggtgtccacttgcggaag
cagcattcctacatcgagcagggcaagaagtgtcgctactgtgacgctgtgttccatgag
aggtatgccctcatccagcatcaaaagtcccacaagaatgagaagcgcttcaagtgtgac
cagtgtgattatgcctgcagacaggagcggcacatggtcatgcacaaacggacccatact
ggagaaaagccttatgcctgtagccattgtgataaaaccttccgccagaagcagctcctc
gacatgcacttcaagagataccacgatcccaactttgtccctgctgcctttgtctgctcc
aagtgtggcaaaacattcactcgcaggaacacaatggccagacatgctgataactgctct
ggcctagatggtggggaaggagagaatggaggagagacaaagaagggcaaacgtggccga
aagagaaagatgcgttctaagaaagaagattcttctgatagtgaggaaaatgctgaacca
gatttggatgataatgaagatgaggaggagacagcagtagaaattgaggctgaaccagaa
gttgagcaagaggctcctgcaccacctcccagtaagaaaagaagaggaagaccaccaggc
aaagctgccacccaaccaaaacaatcccagcctgcagcaatcattcaggttgaagaccag
aacactggtgaaattgaaaatatcatagttgaagtgaagaaagaacctgatgcagaaaca
gtagaggaagaggaggaagctcagcctgctgtagtggaagctcccaatggagacctcacc
cctgagatgattctcagcatgatggaccggtga
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