Aphelocoma coerulescens (scrub jay): 138117072
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Entry
138117072 CDS
T10543
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138117072 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138117072
NCBI-ProteinID:
XP_068883156
LinkDB
All DBs
Position
11:complement(11260216..11347434)
Genome browser
AA seq
2893 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQNQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRPQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASIHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHSEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTPSSELVRAQSQTQIHPWHSSVSNQHLQGRGRATLQGQP
PSSKKTDGSGSYTKLQNTQVRAMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAAKVSV
KIKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEISAGMTVDTEEFFVKYKN
YSYLHCEWATEQQLLKDKRIQQKIKRFKVRKAQRAHFFADMEEEPFNPDYVEVDRVLEVS
LCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPP
NSWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI
LLTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRI
VRGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKV
LLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRL
KEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRK
CCNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVL
IFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGG
LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASL
KLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQI
LQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNS
LVIDTPRIRKQTRPFSATKDELAELSEVESEGDEKPKLRRPCDRSNGYGRTECFRVEKNL
LVYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTED
GQTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKH
HCNKVLLRVRMLYYLKQEVIGNEFQKVFDGIDASEIDVWVPEPDHSEVPAEWWDADADKS
LLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPA
MFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQ
QIQPTFPVQTSMMQPPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERG
RFDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERAS
RTLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRT
DYHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAF
EDTKAKNENLKEDPQSSEDESMSTEETQTILKSEPLSPKNGTPIQITDHRPSMKAETDRR
MVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRS
GSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESV
ASLSTTQDETQDSFQMNNGTPNSGYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKW
PSARRSYDSTTVASFYTTKLLDSSGAAAEYSEPSAPTPPLAAVKEEYDQSPQLSKVKKHV
REKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRELQNASETSLVNF
PKSLPKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGIN
SCQVAAGINPALTYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYV
EDSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPL
KDLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAK
ATAAAAAASAASVSVNPLLANGLLPGVDLPSLQALQQNLQNLQSLQVTAGLMGMPAGLAA
GGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEEKKGSDSKETDTKKERTEDQ
NTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPPLSQSNIF
DVQNSESNDTGSAKPTEEKEENSRVRDQDDKGGTEPSSHNENSTDEGSEKADASSGSDST
SSSSEDSDSSDED
NT seq
8682 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccgcaaaaccagtccaatgggatgtttccagatgtggctgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggccgcagcaa
agcaggaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagttaat
gtgtctacttccctcagagtcagtgttaaccacccaccttcagtttctaatccatcaact
tcacagcagcctctgtctgttcaacagttttctcaaactgcaagtgcttcaatacatttt
tgtgggaatcaagaaggaaattttgatggacagtccccaactattactccatgttctgtc
agtaatagtcaacaattttcatctccgtattcttactctaataatcacatttctcctacc
agccttcttcagcctacaacagctctttctactagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaaccgagcac
atgttgaatcctaatacacctttgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgaatattaattttccagcttcc
actggttctgcttctcagataagccatttcactgaccctattgaaagcaatggttttaca
tctttagatgacaacctacttcatcaagtggagacccatagtgaaccattcacaggactt
gaccccgatgacctcctgcaggaagaccttctgccacagttcgatgactctgcgtttgtt
caggatagcacaagccatgttttagagcatgacctagaacaccacataaccccacagcaa
gtgacaccgtcatccgaactcgttcgggcacagtctcaaactcagatccatccttggcat
tcttcagtttctaatcagcacctgcaaggcagaggtcgtgcaaccttacaaggacagcct
ccttcttccaagaagactgatggttcaggatcatatactaagttgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaag
gcaaatcgaataatatctgaagcaattgcaaaggcaaaagagagaggagaaagaaacatt
ccacgagtaatgagccctgaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aagggtagaaaagttaaatccaaaccaaaggataaggagagcaaaaagccaaaaactggt
tcctcatccaaaattaaagagaaaacaaaaattggaaagctgatcatcacactgggcaaa
aagcagaaaaggaaaaatgaatcttcagatgaattgtctgatgctaagcagactccacag
aggccgctgaaagatgaggactcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aaatacgctgaagagggagaagggaaacaatcagaagaagaagcagctaaagtttctgta
aaaatcaaaaagaattctgcccctttacctgctgaacagcctttacaattatttgtggaa
aatccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaag
aaagaaatatctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaac
tactcatatctccactgtgagtgggccacagaacaacagcttttaaaagataaaagaatc
cagcagaaaataaaacgattcaaagtaaggaaagcacaaagagctcacttttttgcagat
atggaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtgtct
ctttgtgaagataaagacactggtgagcctgttatttactatttagtaaaatggtgttcg
ttgccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaa
gaatttgaacaattacaagcttccaggcctgactcaaggagattggatcgaccacctcca
aactcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaa
tatcaactggaaggacttaactggctcctattcaactggtacaataggcgaaattgcatt
ttagcagatgaaatgggccttggaaaaaccattcagtccattacattcctgtatgaaatc
ctcctgactggtataagaggccctttcctgatcatagctccgctttccactataacaaac
tgggagagagaattccgcacgtggactgacctgaatgttgtggtgtaccatggaagtatg
atcagcaggcagatgattcagcagtatgagatgtacttcagggactcccagggccgtatt
gttcgaggtacctacaggttccaggccattattacaacttttgaaatgattcttggtggg
tgtccagaattaaatgcaatcgagtggcggtgcgttattattgatgaagctcacagactg
aagaataaaaactgcaaacttttggaaggactaaaattaatgaatcttgagcataaagtg
ctgttaacaggtaccccactgcagaacacagtagaagaattatttagcctccttcatttc
ctggaaccattgcgttttcctgctgaatccacgttcatgcaagagtttggagaccttaaa
acagaggaacaggttcagaaactacaagctatcctgaaacccatgatgctcaggagatta
aaagaagatgtagaaaaaaagctggctcctaaggaggaaaccataattgaagtagaacta
actaatattcagaagaaatattaccgagctattttggagaaaaattttgctttcttatcc
aaaggagcagggcaagcaaatgtacccaatctggttaacactatgatggaactcagaaag
tgttgtaatcacccttatctcatcaaaggtgctgaagagaagatccttggagagtttaaa
gaaacatacagtccaagtgctcctgactttcacctgcaagcaatgatccagtctgctggg
aaattggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtcctc
atcttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaagg
tatttgtacgagcgaatcgacgggcgcgtgcgagggaacctcaggcaagctgccatcgac
cgcttcagcaaaccagactcggatcgcttcgtcttcctcctctgcaccagggctgggggc
ctgggcatcaacttgactgcagcagatacctgtatcatttttgattctgactggaatcct
caaaatgacctgcaggctcaagcccgatgccacaggattggtcagaacaaagcagtgaag
gtctacagattgattacacgtaattcctatgagagagagatgtttgacagagcaagtctg
aagctgggactggataaggctgtcttgcagagtatgagtggaagagaaaacagtgttggt
ggtatccaacaactctccaaaaaagaaatagaagacttgcttcgaagaggtgcctatggt
gccattatggatgaagaggatgaaggctccaagttctgtgaggaagacattgaccagatt
ctgcagcgccggactaaaacgatcacaattgaatccgagggaagaggctccacctttgcc
aaggctagttttgttgcatctggaaacaggactgatatttcactagatgatcccaacttc
tggcagaaatgggccaaaaaagcagaaatagatatcgatgcaatcagtggtagaaacagc
ctagttattgataccccaagaatcaggaaacaaacacggcccttcagtgctacaaaagat
gagctggcagagctgtctgaggtggagagtgagggtgatgaaaaaccaaagctccgcagg
ccgtgtgaccgttccaatggctatggaaggacagagtgcttccgggtggagaagaacctg
ctggtctatgggtggggtcgatggagagaaattctgtcccatggtcgcttcaagaggcag
ctgaatgaacaggatgtggagataatttgccgagccctattagcctattgtcttgttcac
tacagaggggatgagaaaataaagagttttatatgggatctcatcaccccaacagaggat
gggcaaacacgagagttacagaaccaccttggcttatcagcccctgtgccaagaggaaga
aaaggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggctt
cgaaaatacaatccagaacatcttttgcaagatgaaggatacaaaaagcacataaaacac
cattgcaacaaggtcttacttcgagtaagaatgctgtattacttaaaacaagaagtcatt
ggtaatgaattccaaaaggtctttgatggaattgatgccagtgaaattgatgtttgggtt
cctgagccagatcactctgaagttcctgctgagtggtgggatgcagatgcagataaatct
cttctaattggagtttttaaacatggttatgaaaaatacaacactatcagagcagaccca
gctctttgcttcttggaaagggttggaaaaccagatgagaaagcagttgctgctgaacag
agagcaaatgattatatggatggggatgtagaagatccagaatataaaccagcaccagca
atgtttaaagatgacatagaggatgatgtttcatccccaggtgatctagtaatagcagat
ggagatggacaaatgatggaaggcgacaaaatctattggcccactcagtctgccttaaca
acgcgtctgcgccgcctgataacagcttatcaacggacgagtaaaaacaggcaggcccag
cagatccagccaacattcccagtacaaaccagtatgatgcagcctccatatgaagaagct
gcactaaatccaaagatggctgctaagattgaaagacagcaaagatggacaagaagagaa
gaagctgacttttacagagtcgtgtccacatttggagtggtgtttgaccctgaaagggga
cgatttgactggaccaagtttcgagcaatggctcggctgcacaagaaaactgacgagagc
ttggagaagtacctgtatgcatttatgtcaatgtgcaggagggtctgtcgtctcccctca
aaagaagaacttgtggacccaaacatttttatccagcccatcacagaggagcgtgcttcc
cggactttgtaccgcatcgagctcctgcggaaagtgcgagaacaggctctcagacaccca
cagttgtttgagcgactaaagctgtgccagccaaacccagacctacctgtctggtgggaa
tgtgggactcatgaccgggatttacttattggagctgctaaacatggagttagcaggaca
gattatcatattcttcgtgatcctgaactgtcttttatgtctgcccagaggaactataat
caaaacaaagtggctctctcgaggacttctactccactcttgcaccagtaccagatggca
ttatctgcttctcctcttacacctcagtcaagactgtcagatgctaaagtgaatgctttt
gaggacacaaaagctaaaaatgaaaatctgaaagaggaccctcagtcttctgaagatgaa
tctatgtctacagaggagacacagacaatactgaaatctgaacctctgagtcccaaaaat
ggcaccccgatacaaattacagaccacagacctagcatgaaggctgagacagacaggcgc
atggtggcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtc
agcaaaagggggtctgactctagctctgactcagactctgactcagatagatcatcctgt
tcttccaggtcatcatcttcatcctcttcgtcttcctcatcttgttcgcactctcgatct
ggttctagctcttcatcatcttcatcttgttcttcagcatcttcatcctcctcctcatcg
tcctcatcatcatcgtcgtcgtcatcatcatcgtctgaagagagtgatagtgatgaagag
gaggcacaaaaacgtgcagaaggaactccacatataaaagcctatgatgaagagagtgtg
gcctctctgagcaccacacaagatgagacacaagacagtttccagatgaacaatgggaca
ccaaattccggctatctcctacaaggtggatacatgttggctgcgtcctactggccaaag
gatcgagttatgattaaccgacttgacagtatttgtcagacagtgttgaaaggtaaatgg
ccttcagcccgcaggagctacgacagcactacagtggcatcgttctacaccaccaaactg
ctggatagctcaggggcagctgcagagtacagtgagcccagtgcacccacaccccctctt
gcagctgtaaaagaagaatatgaccaatcaccccagctgtcaaaggtgaagaagcatgta
cgagaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcag
aagcagggactgtctcagaaaaggccatttgaaagcgaggagggtgcattgggtcagcag
caatatctggctcggctacgtgaactccagaatgcttcagaaaccagccttgtcaacttc
ccaaaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagtc
atagttgacagtcagcctgtagtcaaaaagagacgaggaagaaggaagaatgtggagggg
gttgatgtcctctttatgaatagaaataaacagcctaaccatgttaatccaggtattaac
tcctgtcaggttgctgcaggcataaacccagcactcacttacacgcagtcccaaggcatg
cttgatgcagagagtcccgttcctgttattaacctaaaagatggaacaaggcttgcaggt
gatgatgcccccaaaagaaaagatttagaaaggtggcttaaagaacatcctggatatgtt
gaagattcaggagcttgtattcctaggatgcagctgcatgatgggaggcccaaacaaaaa
agacaccgctgtcgaaaccccaataaactggatgttaacagtttaactggtgaagaacgt
gtccagctcataaatagaagaaatgcgagaaaggttggaggtgcatttgctccccctctg
aaggatttgtgcaggttcttgaaagaaaatccagagtatggtgtggctcctgagtgggga
gaagttgtaaaacagtctggcttccttccagaaggaatgtttgaccgtatcctcacgggc
ccggtggtgcgggaagaagtgagccggagggggaggcgccccaaaagcgagatcgccaag
gcaacagcagctgcagcggccgcctctgctgccagcgtgtccgtcaaccccctgctggcc
aatggattgctgccaggagtggatctgcccagtcttcaggccttacagcaaaacctgcag
aacctgcagtcgctgcaggtgacagcaggattgatgggaatgccagctggcttagctgct
ggaggagaggccaagaacatggctgccatgttccccatgctgctgtcagggatggctgga
ttaccaaacctgctgggcatgggaggacttctgacaaagtcgacagaatccatttcggag
gagaaaaagggaagcgattcaaaggagacagatacaaagaaagaaaggacagaagaccaa
aatacggatactggtggtgaaaactctgtttcaagttctccttcaacatcctctgccgct
gcagctgccaatcctctctctcttaaccctttacttttgtccaacatactttacccaggg
atgcttctcactccaggccttaatcttcatatcccacctttgtctcagtctaatattttt
gatgtacagaacagtgaaagtaatgacacaggctcagccaagcccacagaggaaaaggag
gaaaattctagggttagagatcaggatgacaaagggggaacagagccaagctctcacaat
gaaaacagcacagatgagggttcagagaaagcagatgcttcatctggatctgacagtaca
tcgtcttcatctgaggattcggattcgagcgatgaagactga
DBGET
integrated database retrieval system
