Aphelocoma coerulescens (scrub jay): 138117116
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Entry
138117116 CDS
T10543
Symbol
POLR2C
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03020
RNA polymerase
acoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
138117116 (POLR2C)
09124 Replication and repair
03420 Nucleotide excision repair
138117116 (POLR2C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138117116 (POLR2C)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138117116 (POLR2C)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
138117116 (POLR2C)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
138117116 (POLR2C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
138117116
NCBI-ProteinID:
XP_068883246
LinkDB
All DBs
Position
11:complement(6644147..6650017)
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AA seq
275 aa
AA seq
DB search
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
DEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDL
ISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
GVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDDEDAQAPYDPNGKPERFYYNVESCGSLR
PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacgccaaccagcccaccgtgcgcatcaccgagctgacggacgagaacgtcaag
ttcatcatcgagaacacggacctggcggtggcaaattccattcgaagagtgttcatcgca
gaagtccccatcatagccattgactgggtccagatagatgccaactcctccgtgctccac
gatgaattcattgcacacagactgggtctcatcccactcaccagcgatgacattgtggat
aagatgcaatattccagagactgcacgtgtgacgagttctgcccggagtgctccgtggag
ttcacgctggacgtccgctgcaacgaggaccagactcggcacgtcacgtcccgcgacctc
atctccaacaacccccgcgtcattccggtgacatcgcggagcagagacaacgaccccaat
gactacgtggagcaggatgacatcctgatcgtgaagctgcgcaaggggcaggagctgcgg
ctgcgagcctatgccaagaagggctttggcaaggaacacgccaagtggaaccccacagcc
ggcgtggccttcgagtacgaccccgacaacgcgctgaggcacacggtgtaccccaaacca
gaggagtggcccaagagtgagtactcggagatcgatgacgaggatgctcaggctccctac
gaccccaatgggaagccagaaaggttttattacaacgtggagtcctgcggttctctgcgc
cccgagaccatcgtcctgtctgcactgtccggcctcaagaagaaactgagcgatctccag
acacagctgagccacgagatccagagtgacgtcctcactatcaactga
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