Aphelocoma coerulescens (scrub jay): 138117179 Help Entry 138117179         CDS       T10543                                  Symbol SF3B3 Name (RefSeq) splicing factor 3B subunit 3   KO K12830   splicing factor 3B subunit 3 Organism acoe  Aphelocoma coerulescens (scrub jay) Pathway acoe03040   Spliceosome Brite KEGG Orthology (KO) [BR:acoe00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     138117179 (SF3B3)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:acoe03021]     138117179 (SF3B3)    03041 Spliceosome [BR:acoe03041]     138117179 (SF3B3)    03036 Chromosome and associated proteins [BR:acoe03036]     138117179 (SF3B3) Transcription machinery [BR:acoe03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      138117179 (SF3B3) Spliceosome [BR:acoe03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     138117179 (SF3B3)  Complex B     138117179 (SF3B3)  Complex C    U2 SnRNP specific factors     138117179 (SF3B3) Chromosome and associated proteins [BR:acoe03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      138117179 (SF3B3)     TFTC complex      138117179 (SF3B3) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A Beta-prop_BBS7 Motif Other DBs NCBI-GeneID:  138117179 NCBI-ProteinID:  XP_068883352 LinkDB All DBs Position 11:complement(7933883..7963244) Genome browser AA seq 1217 aa AA seqDB search MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT PPEVSKKLEDIRTRYAF NT seq 3654 nt NT seq  +upstreamnt  +downstreamnt atgtttctgtacaacctaacgttgcagcgtgccacaggcattagctttgctatccatggc aatttctcaggaaccaaacaacaagaaattgttgtttcccggggcaagatcctggagtta ctccgccctgatcccaacacagggaaggttcacactctgctgaccgtggaagtgtttgga gtcatccggtccctcatggcctttaggctgacgggagggaccaaagactacatcgtggtg ggcagcgattcggggcgcattgtcattctggagtaccagccctccaagaacgtgtttgag aagatccatcaggaaacctttggcaagagtggatgtcgcagaatcgttccaggccagtac ttggctgtggacccaaagggccgcgctgtcatgatcagtgccattgaaaagcagaagctg gtgtatatcctgaacagagatgctgctgctcgactcaccatttcctccccactggaagcc cacaaggccaataccttggtctaccatgtggtgggagtcgatgtgggatttgaaaatcca atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccgacaggtgaagct gcagccaacacacaacagacattgacattttatgaattggacttgggtttgaaccatgtt gtcaggaaatacagtgagcccctggaagagcatggcaacttcctcataacagttcctggt ggttctgatggccccagcggggtgctgatctgttctgaaaactatattacttacaaaaac tttggtgaccagcctgatatcagatgcccaattcccaggagacggaatgacttggatgac ccagagaggggtatgatttttgtctgctctgctacacataagaccaagtccatgttcttc ttcctggcccagacagagcagggagacatcttcaaaattactctggagactgatgaagat atggtaacagagattcgactgaagtactttgacactgtccctgttgctgctgccatgtgc gtgctgaaaacagggtttctctttgtggcatctgaatttggaaaccattacctgtaccag atagctcacctgggggatgatgatgaggagccagagttctcttctgccatgcctcttgag gaaggagacacattcttttttcagccacgacctctgaagaacctggtgctggtggatgag ttggacagtttgtctcctattctgtgttgtcagatagcagatttggccaatgaagacaca ccccagttgtatgtggcttgtggtcgggggcccaggtcgtccttgagggttttaagacat ggacttgaggtatccgaaatggccgtctcagagctgcctggtaaccccaatgctgtatgg actgtgagaagacatgttgaagatgaatttgatgcctacattattgtgtccttcgtaaat gccacactggtactgtctatcggagagactgtagaagaagtgactgactctggattcctg ggtactacacccaccttgtcctgctctcttcttggtgatgatgctttggtacaggtttat ccagatgggatccggcacatccgagcagataagagagtaaatgaatggaagacaccaggg aagaaaaccatagtaaaatgtgctgtgaaccaaagacaagtagtgatagcactgactgga ggagaactggtttattttgagatggacccgtcaggacagctgaatgagtacacagagaga aaggagatgtcggccgatgtcgtttgcatgagcctggccaatgttccccctggggagcag cgttcccggttccttgctgttggactggtggacaacactgtcagaattatttcacttgac ccttcggattgcttacagcccctgagtatgcaggcgctgcccgcacagcccgagtcgctg tgcatcgtggagatgggtggcacagagaagcaggatgagctgggagagaggggctccatt ggctttctgtacctgaacattggactgcagaacggtgtgctgctgcgaaccgtcctggac cctgtcactggcgatctttctgacaccaggacccgataccttggctcccggcctgtcaaa ctcttccgtgtccgaatgcaaggccaagaggcggtgctggccatgtcaagccgttcctgg cttagttattcctatcagtcacgcttccacctgactcccctgtcttacgagacactggag tttgcatctggttttgcttctgagcaatgccctgagggcattgtggccatctccacaaac acattgaggattttggcactggagaagctgggagcagtcttcaaccaggttgccttcccg ttgcagtacacaccccgaaaatttgtcattcacccagagagcaacaacctgatcatcatt gagacagaccacaacgcttacactgaggccaccaaggcgcagaggaagcagcaaatggct gaggaaatggtggaggctgcgggtgaggatgagagggagctggctgcagagatggctgca gcctttctgaacgagaatcttcctgagtccatctttggtgctcccaaggcaggaaatggt cagtgggcttctgttatcagagtgatgaaccccatccagggaaatacgctagatctggtc cagctggagcaaaatgaagctgctttcagcgtggccgtgtgccggttctccaacactggt gatgagtggtacgtgctggtgggagtcgccaaggacctgattctgaacccacgctcagtt gctggagggtttgtctacacatacaagctggtgaatagtggtgagaagctggaatttctg cacaagacccctgtggaggaggtccctgcagccattgctccattccaaggccgagtctta attggagttggaaagctcctgcgtgtatatgacctgggcaagaaaaaactgcttcggaaa tgtgagaataagcacattgccaactacatctgtggaatccaaaccattgggcacagagtg attgtttcagacgttcaggagagtttcatctgggtgcgttacaaaaggaatgagaaccag ctcattatctttgctgatgacacttacccccggtgggtcactacagcaacgctcctggat tatgacactgtggctggagccgacaagtttggtaacatctgtgtggtgagattgcctccc aacaccaatgatgaggtagatgaggatcccacaggcaacaaagctctctgggacaggggc ctgcttaatggagcatcgcagaaggctgaagtgattatgaattatcacgtgggagagacg gtgctttccttgcagaagaccacactgattccaggaggctctgaatctcttgtttatacc acgttatcaggggggataggaatcttggtcccttttacttcccatgaggatcatgacttc ttccaacatgtggaaatgcacttacggtctgagcaccctcctctctgtggacgagatcat ctcagtttccgctcctactacttcccagtgaagaatgtgattgatggggacctgtgtgag cagttcaactccatggagcctaacaaacagaagaatgtggccgaggagctggaccggacc ccgcccgaggtgtccaagaagctggaggacatccgcacgcgctacgcgttctga

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