Aphelocoma coerulescens (scrub jay): 138117314
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Entry
138117314 CDS
T10543
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acoe04121
]
138117314 (PDZRN3)
Enzymes [BR:
acoe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138117314 (PDZRN3)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
138117314 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-TRAF
TRAF3_RING
PDZ_Tricorn
zf-rbx1
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
138117314
NCBI-ProteinID:
XP_068883557
LinkDB
All DBs
Position
12:complement(18212473..18343427)
Genome browser
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGDVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAKAFAPAHEPQLVDVATQTDI
TFEHIMALSKMGSPTPPIPVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTL
GSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYSLYFHNSTLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLR
RTAEGINCQGNEGTVAYNVSQKNLFAGSESHESSAGKCHASAKDPDLGKQLESKERKGSD
GSKSPTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDLASGQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggacgtagatcccgacttcaagtgtaacctg
tgcaacaaggtgctggaggacccgctgaccaccccgtgcgggcacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctctccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgatgtggaagcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctggtgctgacccacggcgagcgccgggccggcggccacggc
tgcctgcgggcgttgcgcgcacacggggccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggacgcgctggcccgcgcccgcgcagcctcccccggcaagggt
gaagaaacaaaagcactgactctggtcctgcatcgggactctggatctcttggatttaat
attattggtggccggccatgcgtggacaatcaggatgggtcatctagcgaaggaattttt
gtatcgaaaatagttgacactgggcctgctgctaaggaaggagggctgcaaatccacgac
aggattattgaggtcaatgggaaggatttatccaaagccacccatgagcaggcggtggaa
gcattcaaaacagccaaggagcccatcgtggtgcaggtgctgaggagggccccgcgcgcc
aaggccttcgccccggcccacgagccgcagctggtggatgtggccacccagaccgacatc
accttcgagcacatcatggccctcagcaagatgggctcgcccaccccacccatccccgtg
ctggacccctacctcttgcctgaagaccatccatccgtgcatgaatactatgacccaaat
gactacatgggaggaattcatcaagaaatggaccgggatgagttggaattagaggaagtg
gatttacatagagtgaacagccaggacaagcttggcctcactgtctgttacagaacagat
gatgaagatgacatgggtatttatgtgagtgagattgatcccaacagcatcgctgcgaaa
gacgggcggctccgagaaggggatcgcattatccagatcaatggcatcgaggtgcagaac
cgagaggaagctgtggcacttctctccagcgaggagagcaagaatatctccttacttgtg
gcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgcc
agcatgcttcagcagaagaagcacgaggaggatggaggcaccacagacacagccactatt
ttgtccaaccagcacgagaaggacagtggcgtggggcgcacggacgacagcactcgcaac
gatgagagctctgagcaggagaacaatggggacgatcacaccacctcctccaacactttg
ggcagccagaagaagctgacctacagccatgacaccctgggaagtggggacatgcagttc
agcaatgagtcgttcatctcagctgactgcaccgacgtcgacttcctcggcatccccgtg
gacgagtgcgagcggttccgggagctgctggagctgaagtgccaggtgaagtctgccaac
ccctacagcctgtatttccataacagcaccctggagatgagcaaaagcgaccaagagagc
gttgacagagagctggagatgctcaacgaggagctgcgcaacatcgagctggagtgcctg
aacatcgtgagagcccacaaaatgcagcagctgaaggagcagtaccgggagccctggatg
ctgcacaacagcggcttccgaaactacaacacgagcattgacgtccgcaggcacgagctc
tcggacatcaccgagctgcccgagaagtccgacaaggacagctcgagtgcctacaacacg
ggcgagagctgccgcagcactccgctcacgctggagatctcccctgacaattccctgcgc
agaactgcagaaggcattaactgtcaaggtaacgaggggacagtggcgtataatgtctcc
caaaagaatttgtttgctggctcagaaagccatgaatccagcgctggtaaatgccatgcc
tctgctaaagatcctgatctcggcaagcagctggagagcaaggagagaaaaggcagcgat
ggcagcaaaagccccactcatggtcagaaaccctcgggctcctacgtgtccccataccac
cactctccctataaacacgctcacatccctgcccatgcccagcactaccagagctacatg
caactgatccagcagaaatccgctgtggaatatgcacagagccagatgagcctggtgagt
atgtgcaaggacttggcctcgggccagagcgagcccaggatggagtggaaagtgaaggtc
aggagcgacgggacacgctacatcaccaagaggccagtgagggacaggctgctgagggaa
cgggccataaagatcaaggaggagcgcagtgggatgaccacggatgatgatgccatcagt
gagatgaagatgggccgttactggagcaaggaggagaggaagcagcacttggtgaaagcg
aaggagcagaggaggcggcgggagttcatgatgcagagcaggttagagtgcttaaaggag
cagcaaggtgcagaggagaagaaggagatgaacatcattgaactgagccacaaaaaaatg
atgaagaagagaaataaaaaaatatttgacaattggatgacaatccaagaactgctaacc
catggaacaaaatcaccggatggcacgcgggtgtacaattccttcctgtcagtgactact
gtataa
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