Aphelocoma coerulescens (scrub jay): 138117688
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Entry
138117688 CDS
T10543
Symbol
MBD4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
138117688 (MBD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
acoe03036
]
138117688 (MBD4)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138117688 (MBD4)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
138117688 (MBD4)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
138117688 (MBD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
138117688
NCBI-ProteinID:
XP_068884319
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All DBs
Position
12:complement(21311050..21314787)
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AA seq
479 aa
AA seq
DB search
MAAPGADSGPGDGSRSAAAERPGPSPRSREHGPAGPSAVPRGWQRVSSRRRAGRTAGRID
VCFISPEGKKLRSKRALVEYLQKTGETTLKAADFDFTAPRGSTRSGLRGCGMGAVRTDLE
KEDCQSKVQELHAQNGAEVGIQNIQAGNGHLGDVTSTVESTDLVMEGTNPEGGLKTKRKG
VDGKSVQTRKPGKGSERKNQGDPKSKRQRRLSNTRETECVQNKRVRRQTDTRGADSQGVG
AGKALSAMSRARLRSVAGSQRELGHLPKEGPRSSDTRAATSEEKSYGLETGKVPDPGDLE
ESVPHTQVERRKTSPYFSSKYSKEAPSAPRRKALRKWTPPRSPFNLIQETLFHDPWKLLI
ATIFLNKTSGKMAIPVLWEFLKKYPSPEVARAADWKEMSELLKPLGLYELRAKTIIRFSG
EYLSKAWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWLWENREKLSID
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccgggagcggacagcggccccggggacggcagtcgaagcgcggcggcggaa
cggcccggccccagccctcggagcagggagcacggcccggcggggcccagcgccgtcccc
cgcggctggcagcgggtgagcagccgcaggcgggcgggcaggacggccgggaggatcgac
gtgtgtttcataagccctgaagggaagaagctgagatcaaaacgagcacttgtggagtat
ttacagaaaactggggagacaacattgaaagcagcagattttgatttcacagctcctcga
gggagcacacgctcagggttgagaggatgtggcatgggagctgtgaggactgacctggaa
aaggaggattgtcagagcaaagtgcaggagctccatgcacagaatggtgctgaggttgga
attcagaacatccaggctggaaatggacacctgggagatgttacatctactgtggaaagc
acagatttagtaatggaaggcacaaacccggaggggggtttgaaaaccaaaagaaagggg
gtagatgggaaaagtgtccaaactaggaaacctgggaagggctcagaaaggaagaaccaa
ggtgaccccaagagcaagaggcagagaagactctctaacacacgggagaccgagtgtgtt
cagaacaagagggtccggagacagacagacacacgtggagctgacagccagggtgtgggt
gcagggaaagctctgtcagcaatgtccagggcacggctgaggtcagtggctggctcacag
agggagctgggtcacctgccaaaggaggggccacgctccagtgacacacgtgctgcgaca
tctgaagagaaatcctatggactggagacagggaaggtgccagatccgggggatctagaa
gagtctgtcccacacacacaagtggagagaaggaaaacaagtccatatttttccagtaaa
tacagcaaagaagcccccagcgcacccagaaggaaggccctcagaaaatggactcctcca
cgttctcctttcaatcttatccaagaaacactcttccatgatccatggaagcttctcatt
gccaccatatttctcaataaaacttcagggaaaatggccattccagtgctctgggagttc
ctgaagaagtatccttctcccgaggtagccagggctgcagactggaaagagatgtcagag
ctgctcaaacctctcggcctctatgaactcagagccaaaaccatcatcaggttctcaggt
gagtacctgagcaaggcctggcggtacccgatcgagctgcacggcattggcaagtacggg
aatgactcctacagaatcttctgtgtcaacgaatggaaggaggtgcagccacaggaccac
aagctgaacgtgtaccacacatggctgtgggagaaccgggagaagctgagcatcgactga
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