Aphelocoma coerulescens (scrub jay): 138117905
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Entry
138117905 CDS
T10543
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138117905 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138117905 (CNOT6)
Enzymes [BR:
acoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138117905 (CNOT6)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138117905 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138117905 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
138117905
NCBI-ProteinID:
XP_068884655
LinkDB
All DBs
Position
13:complement(7619781..7652773)
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWTLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaggaagcagccaatggaaagaaatcacactgggcagagttggaaataagtgggaaagtg
agaagcttaagctcatcattgtggacactgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatatctggac
ttgtcctctaataaaattcgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactacatttaaataacaacctgttacgagttttaccttttgagctgggaaaactgttc
cagttacagactttgggtctgaaaggaaacccacttacacaggatattctgaacctgtat
caggaaccagatgggacacgaaggctactgaactatttgcttgataatttggcaggtact
gcaaaaagaatttcgacagaacagccacctccaagatcttggattatgttgcaagaacca
gaccgtacaagaccaacagccttgttctctgtcatgtgttacaacgtcctgtgtgacaaa
tacgccacccggcagctgtatggctattgtccatcctgggccttgaactgggaatacaga
aaaaaagccattatgcaggaaatactgagctgcaatgctgacatcataagtctgcaggag
gttgaaacggagcagtactacagttttttcctggtagaattgaaagaacgtggctataat
ggattcttcagtccaaaatctagagctaggacaatgtcagaacaggaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaatttactttggttcaaaagcatactgtt
gagttcaatcaactagcaatggcaaactcagaaggttcagaggctatgctgaacagagtt
atgacaaaagataacattggagttgctgttctgttagaactgcgaaaggaattgatagaa
atgtcctctggaaagccacatcttgggatggaaaagcagctagttcttgtagctaatgca
catatgcattgggacccagattattctgatgtgaagctggttcagactatgatgttcctg
tctgaggtaaagaacattattgataaagcttctcgtagtctcaaacctggtgtttcggga
gagcttggaaccattccacttgtactgtgtgcagatctcaattctctaccagactctggt
gttgttgagtacttgagcactggtggagtggaaacaaaccacaaagattttaaggaactg
agatacaatgaaagtcttactaacttcagctgtaatggaaagaatgggacaacaaatgga
agaattacacatggtttcaagttgaagagtgcctatgagaatggtctaatgccttataca
aattacacattcgacttcaagggtattattgattacatcttctactctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccacatccactcatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcctcctgtaaatggaatccatctccctggcaggaggtag
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