Aphelocoma coerulescens (scrub jay): 138118089
Help
Entry
138118089 CDS
T10543
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
138118089 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoe01009
]
138118089 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acoe04515
]
138118089 (PCDH1)
Protein phosphatases and associated proteins [BR:
acoe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138118089 (PCDH1)
Cell adhesion molecules [BR:
acoe04515
]
Cadherins
Protocadherins
138118089 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
138118089
NCBI-ProteinID:
XP_068884977
LinkDB
All DBs
Position
13:17484997..17541202
Genome browser
AA seq
1272 aa
AA seq
DB search
MEPGCSEQAGAASRWCSHAAELSMCAAKGAAQQVGVAQRGDALPSSLRRSGKDFPASWRE
IHAATGPGAPLQRRMNSLASCLGLWLLCQLPALASGTRAVYKVQEEQPPNSLIGSLASDY
GLPDMGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRENLRECQHLLPGEPCFLEFEVSIT
NLNANSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFPIPLAMDRDSGPNG
VASYELMAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDLTIKVQDGGNPPRA
SSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSDQGANAEIDYSFHQ
ASDMVRRLLRLDRATGLITVQGPIDREDIGTLKFSVMAKDKGANPKSARTQVVVTIKDMN
DNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENAVVTCVVAGDVPFQ
LRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSSTNSLKVQVMDVND
NAPVFSQSFTEVAFPENNEPDDLVMEVSATDADSGSNAKLVYSLVTDPASKGSFTIDPDS
GEIRVKAVLDREQRERYEFLVVAEDKGSPSKQGTASVAINVMDRNDNDPKFMLSGYNFSV
MENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTILSSISFDREQQSTY
TFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILPHTSPGQQVSKVKA
EDIDSGINAELIYSITGGNPFELFQISPQSGDITLEKEILRKHHGLHRLVVRVNDKGKPS
RHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSKQRSNILFGVIAGI
VAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKSKSKVKKSKSPKPP
KPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKYTNKQLPHRRVTFS
AASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNALKLSTFVPYQDRGS
QEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEIPLTQTSDFQPATT
PSAQTTKREIYL
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggagccgggctgctccgagcaggcaggcgcagcctctagatggtgcagtcatgcagcc
gagctgagcatgtgtgcggcgaagggcgctgcgcaacaggttggcgtagctcagcgggga
gacgcgctcccatcctcgctgcggcggagcgggaaggactttccagcatcctggcgagaa
atccacgccgcaaccggcccgggagctcccctgcagcgcaggatgaactcgctggcatcc
tgcctgggcctgtggctcctctgccagctccctgccctggcctcggggacacgtgcggtc
tacaaagtgcaggaggaacaaccccccaacagcctcatagggagcctggcctccgactac
ggcttaccggacatggggcacctctacaagctggaagtgggggccccgtacctccgtgtg
gatggcaagactggggacatctacaccacagagacctccattgaccgggagaacctgcgg
gagtgccagcacctcctgcccggagagccctgcttcctggagttcgaggtgtccatcact
aacctaaacgccaacagcagcccgcgcctgctcgaggggcagatcgaggtgctggatatc
aatgacaacacccccaatttcgcctcgcccgtcctcaccctctccatccccgaaaacacc
aacatcgggacgctcttccccatccccctggccatggaccgggactcaggccctaacggt
gttgcctcctatgagctgatggctggtccggaggcgcaggagctctttgggctgcaggtg
gccgaggaccaggacgagaagcagccgcagctgatcgtcatggggaacctggaccgggag
cagtgggactcctacgatctgaccatcaaggtgcaggacgggggaaaccccccacgggcg
agcagcgcccttctccgcatcaccatcctggacatgaacgacaacgcgcccaagttcgag
aaggccctgtacgaggcagagctctccgaaaacagccctgtggggcactctgtcctccag
gtgaaagccaatgactcggaccagggtgccaacgctgagatcgactactccttccaccag
gcctccgacatggtgcggcggctgctgcgcctggaccgcgccacggggctcatcaccgtg
cagggccccatcgaccgcgaggacatcggcaccctcaagttctccgtcatggccaaggac
aagggtgccaaccccaagagcgcccgcacgcaggtggtggtcaccatcaaggacatgaat
gacaatgcgccctccatagagatccggggcatagggttggtcacccaccaggatggcatg
gccaacatctcggaggatgtgccagtagagacagcagtggctctggtgcaggtgtccgac
cgagatgagggcgaaaacgctgtggtgacctgcgtggtggccggtgatgtcccgttccag
ctgcgccaggccagtgagacggggagtgacagcaagaagaaatacttcctgcagaccacc
acgccgctggactacgagtcggtgaaggagtacacgattgagatcgtggctgtggattcg
ggcaacccgcccctctccagtaccaactccttgaaggtgcaggtgatggacgtcaatgac
aacgcccctgtcttcagccagagcttcactgaggtggccttccctgagaacaacgagccc
gatgacctggtgatggaggtgagtgccactgacgctgacagcggctccaacgccaagctg
gtttattccctggtgacagaccccgcctccaagggctccttcaccattgaccctgactct
ggggagatccgagtgaaggcggtgctggaccgagagcaacgggaacgctacgagttcttg
gtggtggcagaagataagggcagccccagcaagcagggcacagcgtctgtggccatcaac
gtcatggacaggaatgacaacgaccccaagttcatgctgagcggctacaacttctcagtg
atggagaacatgccacccctcagccccgtgggcatggtgacggtcatcgatgctgacaaa
ggagaaaatgcccggatccagctatcagtggagcaagacaacggggattttgtcatccaa
aatggcactggcaccatcctctccagcatctcttttgaccgggagcagcagagcacctac
accttccgactcaaggctgtggatggtggggatccccccaggtctgcctacgtgggcgtg
actatcaacgtcttggatgagaatgacaatgcccccttcatcacttccccctccaacgcc
acctacaagcacatcctgccccacaccagccctggccagcaggtgagcaaggtcaaggcg
gaggacatcgactcgggcatcaatgccgagctgatctacagcatcacgggaggcaacccc
ttcgagctcttccagatctccccgcagagcggagacatcaccctggagaaggagatcctg
cgcaagcaccacggcctgcaccgcctggtcgtgcgcgtcaatgacaagggcaagccctcg
cggcacggcacggccctggtgcacttctacgtcaacgagacgctggccaaccgcacgctg
ctggacacgctggtggggcacagcctggacactccgctggacatcgacatcgccggtgac
cccgagtatgagcgcagcaagcagcggagcaacatcctctttggggtcatcgccggcatc
gtggctgtcaccctggtcatcgtgctggtggtcctggtgcgctactgccggcagcgcgag
gccaagagcggctaccaggcgggcaagaaggagaccaaggacctttatgcacccaagcag
gccagcaagagcgggaagagcaagagcaaggtgaagaagagcaagtctcccaagccgccc
aagcccacggaggatgaggaggagacagggctgcagaaatcactcaagttcaacctcatg
aacgactctgtcagcgacagcccccggatccacctgcccctgaactaccctccgggcagc
ccagacctgggccgccactaccgctccaactcgccgctgccctccatccagctgcagcct
cagtcaccctctgcctccaagaagcaccaagtggtgcaggacctgccggccaccaacacc
tttgttggcaccggggacaacaactcgacgggctccgagcagtactcggactacagctac
cgcaccaacccccagaaatacaccaacaagcagttacctcatcgccgagtgacgttctct
gcagccagccaggctcaggacctgcaggacccctcccagcacagctactacgacagcggg
ctggaggaatctgagacccccagcagcaaatcttcatcagggccccgcatcgggcccctg
gccctgcccgaggaccactacgagcgcaccacgcccgatggcagcatcggggagatggag
caccctgagaacgatctccggcctctgcccgatgtagccatgactgggacctgcacccgg
gagtgcacggagttcggccactccgacacctgctggatgcccggccagtcctcccccagc
cgcaggcccaagaacgccctcaaactctccacttttgtgccttaccaagaccgagggagt
caagagcaagtcgggaacggcagccccagactgtcggaagagcgcagcaccaaaatggcc
aacctccgcctgctccccacgtacagtgccttctccaatagtagccatgagccctgcaag
gactctcccatggaggaaattcctctcacccagacctcggacttccagccagccaccacc
ccctcggcccagaccaccaagagggagatctacctgtga
DBGET
integrated database retrieval system
