Aphelocoma coerulescens (scrub jay): 138118371
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Entry
138118371 CDS
T10543
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acoe04515
]
138118371
Cell adhesion molecules [BR:
acoe04515
]
Cadherins
Protocadherins
138118371
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Cadherin_CELSR2_9th
RibLong
Motif
Other DBs
NCBI-GeneID:
138118371
NCBI-ProteinID:
XP_068885409
LinkDB
All DBs
Position
13:17007826..17010291
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AA seq
821 aa
AA seq
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MKLMKSEEPLPGRAVALILLLCVPGMRAEPARYSVPEEAEKGAFVANIAKDLGLTGEELL
ARQARLVPEGEKQYLQLNQHTGDLVVREQMDREELCGQSEPCLVRFEVLLESPLQSFRAE
VRLTDINDHAPVFLNKEIVLKIPESTKPGTRFLLESAHDPDVGNNSLQHYSISSNEYFHV
YTQRRSDGRRYAELVLDRALDREQQAEVAFSITAVDGGTPPRSGTALIRVVVLDINDNIP
VFTQSLYKISVMENSSQDTIVVVVSASDLDSGTNGEIVYSIVQNSEENFETFKINPETGQ
IRLKKPLDYEETKMFEVDVQATDGGGLSTHCKVEVQVKDVNDNAPEVIITSFTSTLSEAA
PLNTVVSLFNVRDRDSGDNGRTTCELTGEQPFRITLLAADAYALVTSETLDREQVEEYNV
TVRARDEGSPALSVSKTLFVRLLDVNDNAPTFTQSIYTMVMSENEPAGRSLGRLSATDAD
AGENARVRYALVPPPTGTLAAASFVSVDAESGTVRSLRPLDYEKVRTFEVTVRAADGGSP
PLSAQAVLRVVVRDENDNAPVLLHPAPDSSAAGELVPRWAPSGYLVAKVVAVDADAGQNA
WLSYELAKATEPGLFRVGLHSGEVRTARAVTERDAARQRLIVLVRDRGQPPRSATATLAV
ALVDDFSDAFHQLGHDPASGEQPQVAEEEMLTTYLIASLCCISSLFLLSILVLTANMLCK
ARVRAELSPPSPSCYADGDFASDSVGGTGTLSPAYRYEMCLTRGSGSSEFRFLRPVLPSP
HSNTEAGLEKDEEPLYHSQTACDREAQQGSAATPFSCQTGQ
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgatgaagagcgaggagccgctcccggggcgagcggtggctctgatccttctc
ctctgcgtcccggggatgagagcagaacccgctcggtactctgtgcccgaagaggcggag
aaaggcgcttttgtggcgaatatcgctaaagatttgggactgaccggtgaggaattattg
gctcgtcaggctcgactcgttcctgaaggagaaaagcagtatcttcagcttaaccagcac
accggggatttggtggtgagagagcaaatggaccgggaggagctgtgtggacagagcgag
ccctgcttggtgcgtttcgaggtgctgctggagagcccactgcagtccttccgagctgag
gtaagactcaccgacataaatgatcatgctcctgtgttcctaaataaagagatagtttta
aagatcccggaatctacaaagcctgggactcgatttttgctggaaagtgctcacgatcca
gatgtggggaacaatagtcttcagcattatagtatcagctcgaacgagtatttccatgtg
tacacccagcggcggagtgacggcaggaggtacgccgagctggtgttggatcgagccctg
gaccgggagcagcaggcagaagttgctttcagcatcacggctgtggatggtgggactcca
ccacggtctggaacagccttaatccgcgtggtagtcctggatataaatgacaacatcccg
gtatttacccagagtctgtataaaatatctgtaatggaaaatagctcacaggataccata
gtggtggtagtgtctgctagcgatttagactcaggcacaaacggggaaatagtctattcc
atagttcaaaattcagaggaaaatttcgaaacgttcaaaataaacccagagacaggtcag
attcgactcaaaaagcctttggattatgaagaaacaaagatgtttgaggtagatgtccag
gccacagatggagggggcctgtccacgcattgcaaggtggaggtgcaggtgaaggacgtg
aacgataatgcccccgaggtgatcatcacctcgttcaccagcaccctctccgaagccgcc
ccgttgaacaccgtggtgtccctcttcaatgtgcgggaccgagattcgggggacaatggc
aggacgacctgcgagctgacaggggagcaacccttcaggatcacgctgctggcagccgac
gcgtacgcgctggtgacatcagagacactggaccgggagcaggtggaggaatacaacgtg
acagtgcgagcccgcgacgagggctcccccgccctctcggtgtccaagaccctgttcgtt
cggctcttggatgtgaacgacaacgcacccaccttcacccagtccatttacaccatggtg
atgagcgaaaacgagcccgcggggaggagcctgggccgcctcagtgcaacggacgccgac
gcgggagaaaacgcccgcgtgagatacgcgctagtgccgccaccaacaggcaccctcgcc
gcggcatcatttgtgtcagtggacgcggagagtggaaccgtccggagtttgcgcccgctg
gactacgagaaggtgcgcaccttcgaggtgacagtgcgcgcagccgacggcggctccccg
ccgctcagcgcccaggccgtgctacgcgtagtcgtgcgggacgagaacgataacgcgccc
gtgctgctgcacccggcccccgacagcagcgcggccggagagctggtgccgcgctgggcg
ccctccggctacctggtggccaaggtggtggcggtggacgcggacgcggggcagaacgcg
tggctgtcctacgagctggccaaggcgacggagccggggctgttccgcgtggggctgcac
agcggcgaggtgcgcacggcgcgggccgtgacagagcgggacgcggcccggcagaggctc
atcgtgctggtgcgggaccgcgggcagccgccgcgctccgccactgccaccctcgccgtg
gcactggtggatgatttctccgatgccttccaccagcttggccacgatcctgcaagcgga
gagcagccgcaggtggccgaggaggaaatgctcaccacttacctcatcgcctccctgtgc
tgcatctcgtccctttttctcttgtccatcctcgtcttgacggcgaacatgctctgcaaa
gctcgtgtccgggcagaactttctcctccctcccccagttgctacgcagacggagacttc
gccagcgacagcgtgggcggcacgggcactctgtcgccggcttaccgctacgaaatgtgt
ctgacccggggctcgggaagtagcgaattccggttcctgaggcccgtcctgcccagcccg
catagcaatactgaggcggggctggagaaggacgaggagccgctataccactcgcagacc
gcctgcgacagggaagcccaacaggggagcgcagccactcctttcagctgccagactggc
cagtag
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