Aphelocoma coerulescens (scrub jay): 138118528
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Entry
138118528 CDS
T10543
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03440
Homologous recombination
acoe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138118528 (PALB2)
03460 Fanconi anemia pathway
138118528 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138118528 (PALB2)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
138118528 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
138118528 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
138118528
NCBI-ProteinID:
XP_068885669
LinkDB
All DBs
Position
14:8528509..8537312
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AA seq
1340 aa
AA seq
DB search
MEAPAAAAALSGADKEKLREKLALLRREYSETVIRLRRARRAERARSHGRRERSPPGGRR
GERDAPGGRWWERDAPGSRDNTSPSAGGPSQLQTKTCSDADTEKTTSVTVKHVPEFSSDE
VSPQDSSRAESFQASQENLYCGITRPVPEEKTPQTSRGMMKLRRRTKALESKERESVHDV
HRISAGAMMKNQIANAEELQSPVFRRSSLSHTEEPTQRASGAVLVQGKRNSFTPDAASGV
VQDVFEGSVTAGEPELSPHALRDSKDIWQPESSRAVATLGKREPCSQHGDAVLLDPRGDG
EEESPSIIKQPEGESLCEDQEELCGLLDLMSENEILPDSRNNTITKESKNLEGQQSDTNT
LNPCPADHALDNAEELLENQQLEIQSRLSPADKAMAPEGTLSSCTVVEGLLFPVEYYVRT
TRRMSNCQRKVDLDAVILSQLGRKKKGQRSKCKQKDANPSQPSQERAESDSEPGVMPSPF
LGTENDPANSGSSQKSLPASSSSSSSTSLGSISQKSITSTRQEQRQSQRKQKGRRKSACK
VPMHPVSQELVESQDPIMANESCALLSNENQSEKENCDANLERSSSDERRLSGAAALGSV
GTGVTGATQPASPDPPLGGSQVPGKCHKTLLEQVQNPLHSSDSLSPGSETFASHVGDVEA
NSPVCQGDKHPVERAKKQRRACGVEQLPGVSVPVRRSLRCSVRHRAQTGSTDDSSRGRNC
PMGSQGPATLGLPAVDPDARGSLFSFRSLQWLVPKLGIRDFHLPNEEFGVLKLEKLKSSP
VNDLEDFVLCVSEDGVAPGDTQDAQINPKEKSLGNNLISPSKNGLPELPCMNPTFKKELS
THELLFTPMGTVLAEAPTHTESQISSSVFPAVGATPGVLPSVHSEVFPDTPFVPALPLTS
PSPRGAAALVLGHVAHRDPAVPLCPDSCAAGAATSQEEQRTTFPLAAERGPENKSDETVS
LEKHEQSENKEQESCRASSEQTKDVAEQLTPVLLDGPREESLQLVSELKDSSCSCAVDVS
MVWWEAAGCRELRVVTASESAVSLWEPLAPDCWGKVYTWHLREIPVIQIIPLPDTCNLVC
VALGELEIGEIRLLLYSSETDSFKHSLVKTGNIKAVVGLKDQRLVSSSRTIQEQQVEMVS
LSETGESKDRKTLMPPEETVTAFAEVEGMKEALVGTTAGNSVVVWNLKTGQLLRKMHVGY
SYPASICHRAYSDSGLLFVVLSHPLAKESESCGSLAFRVVAFNPRTGRSVGVMFSCLPPG
HAGRYLEGDVWDTAGAAVLTSGAVAVWDLLRGWCMAVLPPDPAGHWALARWAAGRAGLLA
GRRDGTVHLYRYQPPQPGAT
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggaggccccggcggcagcggcggccctgagcggcgccgacaaggagaagctgcgggag
aagctggcgctgctgaggcgggagtacagcgagaccgtcatccggctgcggcgggcgcgg
cgagccgagcgagccaggagccacggccggcgggagcggagccccccaggtgggagacgg
ggagaacgggatgccccaggtgggagatggtgggaacgggatgccccaggttctagagat
aacacatctcctagtgctggtgggccctctcagttacagactaaaacctgctctgatgct
gatacagagaagacaacatctgtcacagttaagcatgttccagaattctccagtgatgag
gttagcccgcaggacagctcccgggcagaaagctttcaggccagccaggaaaacctgtac
tgtgggatcaccaggcctgtccctgaggagaaaacgccccaaacctcccgaggcatgatg
aagctgcggagacggacgaaggctctagaatcaaaggaacgggaatcagtgcatgatgtg
catcgaatcagtgctggtgcaatgatgaaaaatcaaattgccaatgcagaggagcttcag
tcaccagtgttcaggcgcagcagcctctcgcacactgaggaacccacccaaagggcatct
ggggcagtgcttgtgcagggaaaaagaaatagttttactcctgatgcagcatcaggggtt
gtacaggatgtgtttgagggcagtgtcactgcaggagagcctgagctctccccacatgcg
ctgagggacagcaaggacatctggcagcccgagtcctcaagggctgtggccacacttggt
aaacgtgagccatgttcacagcatggagacgctgttttactggaccccagaggtgatgga
gaagaagaatcccccagtataataaaacagccggagggtgagagtctgtgtgaagatcag
gaggaattatgtgggctcttggatttaatgtcagaaaatgaaatattgcctgacagcaga
aataacaccataaccaaggagagcaaaaaccttgaaggacagcagagtgacactaatacc
ctaaatccctgtcctgcagatcatgctctggacaatgctgaagaactgttggagaatcaa
cagcttgaaattcagtcaagactttctcctgctgacaaggcgatggctcccgagggcacg
ctgagctcttgcacagtggttgaagggctgctctttcccgtcgaatactacgtccggaca
actcgccgcatgtcaaattgccagaggaaggtggacctggatgctgtaatcctcagccag
ctgggcaggaaaaagaaaggtcagcggagtaaatgcaagcagaaggatgcaaaccccagt
cagccctcccaagagagagccgagagtgattcggaaccaggggtcatgccctcccctttt
cttgggacagaaaacgatccagcaaactcaggtagttctcagaaatctcttcctgcgtcc
agcagcagcagcagcagtacttcacttggatccatttctcagaaaagcatcactagcaca
aggcaagagcagaggcaatcccagaggaaacagaagggaagaagaaagtctgcctgcaaa
gtccccatgcatccagtgtcacaagagcttgtagagagtcaggatcccataatggccaat
gaaagctgtgccctgctgtcaaatgagaaccagagtgaaaaggagaactgtgatgctaac
cttgaaaggtcatcctccgatgaaaggagattgtctggtgctgcagcactggggtctgta
gggacaggagtgactggagctacacagccagcgagtcctgatcctcctctgggcgggagc
caagtgccagggaaatgccataagactctgttagaacaggttcaaaatccactccacagc
agtgattctctgagcccagggagtgaaacttttgccagccatgtgggagatgtggaagcc
aactctcctgtgtgtcagggagataaacatccagtggagcgtgcgaagaagcagcgaaga
gcctgtggggttgagcagctccccggtgtcagtgtccctgtacgccgctccctgcgctgc
tctgtgagacacagggcacagacaggctcaacagatgacagcagcagaggacgcaactgt
cccatgggttcacagggtcctgctacccttgggctccctgctgtggaccctgacgctcgt
ggctccctcttctccttccgcagcctccagtggctggtccctaagctgggcatcagggac
ttccacttaccgaatgaggaattcggagtgctgaaactggagaaattgaaatcttctccc
gtgaatgacttggaggattttgttctgtgtgtgtctgaggatggtgtggctccaggggat
acacaagatgcacaaattaatccaaaagaaaaaagtctcggaaataatttgatttcacct
tccaaaaatggattgcctgaactcccctgcatgaacccgactttcaagaaggagctttcc
acccatgaattgctatttactcccatggggactgtcttagctgaggctcccacccacact
gagtctcagatttcctcgtctgttttccctgctgtgggtgcaaccccaggtgttttacct
tcagtgcacagtgaggtcttccctgatacaccttttgtacctgccttgccactgacctca
ccttcccccagaggagcagctgccctggtcctggggcatgtggcacacagagacccggct
gtgccactgtgccctgacagctgtgctgcaggggctgccacaagccaggaggagcaacgt
acaacatttcctttagcagctgaaagaggtcctgagaataaatctgatgagactgtgtcc
ttggagaagcatgagcagtcagagaacaaagagcaggaatcctgcagagcttcatctgaa
cagacaaaagatgtagcagaacagttgactccagtgctgctggatggtcccagagaagag
agcttgcagcttgtgtcagagctaaaggattcctcgtgctcgtgtgctgtggatgtgagc
atggtgtggtgggaggctgctggctgcagggagctgcgtgtggtcactgcctccgagagc
gctgtgtccctctgggaacccctggcacccgactgctggggaaaggtctacacctggcac
ctgagagagattcctgtaatccagattattcctctgccagacacctgtaacctcgtgtgt
gtagcactgggagagctggagattggagaaataaggctcttgctgtattcttctgagact
gactcattcaagcactccctagtgaaaactgggaatataaaagcagttgttgggctaaag
gaccagaggctggtgagcagcagcaggaccattcaggagcaacaagtggagatggtgtcg
ctctcagagacaggggagagcaaggacaggaagactctgatgccccctgaagaaactgtt
acagcctttgctgaagtagaagggatgaaagaggccttggtgggcaccactgcagggaac
agtgttgtggtttggaatctgaaaacaggtcagctcctgaggaagatgcatgttggttat
tcctacccagcttccatctgccatcgagcatattctgactctggccttttgtttgttgtt
ttaagtcatcctcttgccaaagagagcgagtcctgtggaagcctggcgttccgtgtggtg
gccttcaacccccgcacgggccggagcgtgggggtgatgttctcctgcctcccccccggc
catgcaggcaggtacctggagggtgacgtgtgggacactgcgggagctgccgtgctgaca
tcgggcgccgtggccgtgtgggacctgctgcggggctggtgcatggcggtgctgcccccg
gaccctgcggggcactgggcactggcccgctgggccgccggtagggccgggctactggct
gggcgccgtgatgggaccgtccacctgtaccggtaccagccaccccagccaggagccacc
tga
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