Aphelocoma coerulescens (scrub jay): 138118642
Help
Entry
138118642 CDS
T10543
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
138118642 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acoe04121
]
138118642 (SLX4)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138118642 (SLX4)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
138118642 (SLX4)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
138118642 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
Baculo_IE-1
Zn-C2H2_12
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
138118642
NCBI-ProteinID:
XP_068885866
LinkDB
All DBs
Position
14:3100639..3130472
Genome browser
AA seq
1855 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKKAGDAEATKRVQDRPKSTTTQSKLRRGKSAAKSQTHHHL
PAVKEINLPQDLGPKDQMLVHEEDGDAAACSGETAQGDGARSPLPASQLSTESTECSQRP
LTANPLSGCSQTTLPLLPATPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSLDGS
VPKAAASGDFPARSQEQNPPEDDTHHLPSVEHDSALALALQQESKDEALASLEDAGLFFC
QICQKDLTAMNTLRREQHVNRCLDEMEEAQMSSSSKPVVPECPICGKQFQTSQSRVSHLK
RCAVEMDVPPNLLLQAVQLQVATLGDAALQCPSNQPSRAKRKGPSNEDLRKTQKRAKMEL
KDEDLQVAMAMSRSLLEQEKQEQAKSVTNVKPVAAFPIKWKPGSEKKRRRKGASAPPPLL
LQDPEKAHKRIQERVAMMLTEEVEFPPTPQLPISRILEDESGKAAWLMPLSKARDCFLWK
ISALTGPCDPGSFYTADLTPPIEPWKPVQNKPENLQPPVGSHQPEVSQQTHPDLSSQEPI
CTKVGGQTSDESKAGPRGDGQLLSPSQKDIQTLQDLVELAREGLTLTQWNLDTGHVQAAE
QPGEELTPSDPPHSGFVPPSKEKNLLRSSSKTSSLRLLAQDFGAMVNNPHLSDVQFQVDS
GDILYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPTHRVLLSDVSAEAVAAFLRYLYAA
DTNFPAGLRPQLRALAARFGVRELMAECENNNGESQVSSGVDSEDDLISVRDEEDCEDRA
ENFQDLLNSVWVGEDEEEVAMLNPECQKEDDSEVGEQELEEIYEFAATQRKMAQGEREVS
KGTCCSISSDTEAARGTNQQSEEEEVKRAESASVSNSLKGLRDGNSVERSECHLSAQEEK
MQNINRCKSMNDPEATIVPHHSEPQKWDGAAHGANEGGAVEGCKDVKDSKSPQVSHDKAD
HREEQFPGFQGDTDINDSYERLFSASQGDHCEPSPVKEVTKESGKSPSEKHVGLNDSLLF
SKSQKGCSPCKNGFCVPYVSLFPALGSSPASPKSEGNFAREHMSTPKQNKKEKSFPSDEI
HSQKAKEPGAASRNEITVSPAELPHSESNKHAHVPVLSSPGRTQDAAAQGIKEGDVIVLS
SSDDEMELQQGKKLLESDSALKKTEIPGLLRCTDIEQSPEIPKPDHNSSVPETEQRSTQV
SCGNTDTVCVSGDVKVSPEFPRSRQTGACTEIKQSPNPSPGKRLSHELSPGTDCFWFVPG
TPVLSKSRSFPTQTQVTSINSVKGPESKLSTKNVAAGNSNHEMTGKLIKDHETMLSDEHL
PRENSSNGRSPPHSPAAESFSKNSLPVSPVDPVLFSPGHTNTESKCANISGLPTLGPPFQ
EQPLEDKTNISVVELEDSDREVSLPSLGSSVLLCEEPPIPVDDCWHVEYLSPVRGDGHDS
GQVSHAKTSMASSPSPDSWHEQEESPVQVQGIKGSTPLQGSPACRRTTLHCPEKSPIEPC
SSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAGACQSDPVKTPEPSCQENN
GSPSTPVTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDRDSDFEDE
IPYSQPLPQKSPAKQLRQPKAGQAAGRNRAPRAVGKRKQPAKASAVLPRGKADGASHGTG
CATPKEGTNVPHHPEGAKEQERPPVSLAADGKDLPASQESADSSVDGSDISFGSQSSFVN
GFETCAFASEEEEEEFPASQAAAREEEKLEAIRWYIRSNTALYNRILFYEPIELADLHTE
LKQNGIKISKAKLLNFLDSQCITSTMAKARKEKEQKRKGSRKQRRRYQVKPTPTP
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaggagttgtgggcaaacattttgagtagggcaaag
aaaaaggctggggatgctgaggcaacaaagagagttcaggataggccaaagagcaccaca
acacaaagcaaattaagaagaggcaaatctgctgctaagagccaaacccatcatcactta
ccagcagtgaaggagataaacttgcctcaagatttgggtccaaaggatcaaatgttggta
cacgaagaagatggcgatgctgcagcctgcagtggtgagactgcacagggggatggagca
agaagccctctccctgccagccagctgagcacagagagcactgagtgtagccagaggcct
ctgacagcaaatcctctgagtggctgttcccagactaccttacccctccttcccgctact
cctccaggaacctgctcttcacccaccccaaaggtgcgggtggcagagctggtggtggag
agaatgcagcagtttaagagggtggcacctgagcagctgaaacacagcttggatgggagc
gtgccaaaggctgcagccagcggggatttccctgccaggagccaggagcagaaccctcct
gaggatgatacccaccatctcccatctgtggaacacgacagtgctctggctttggctctt
cagcaggaatccaaggacgaagccctggcaagcctggaggatgcaggcttgttcttctgt
cagatctgccagaaggatctcacagccatgaacacgctgcgacgagagcagcacgtcaac
aggtgtctggatgagatggaagaagcacagatgtcatcctccagcaaaccggtggtccct
gaatgtcccatctgtgggaagcagttccaaacctcacagagccgagtcagtcacctgaag
cgctgtgctgtggagatggatgtgcctcctaatctgcttcttcaggcagtgcagttgcag
gtggccacgcttggtgatgcagctcttcagtgtcccagcaatcagcccagcagggcaaag
cggaaaggcccctccaacgaggacttgaggaaaacacagaagagggccaaaatggagctt
aaggatgaagatttgcaggttgccatggcaatgtcacgctctctgttggagcaagaaaag
caggaacaagcaaaatcagttacaaatgtgaaaccggtggctgctttcccaatcaaatgg
aagccaggatcagagaaaaaaaggcgtagaaaaggtgccagtgcccctccaccactgctg
ctccaggacccagagaaggcccacaagaggatccaggagcgagtagctatgatgctgaca
gaagaggtggaattccctcccacccctcagctgcccattagtaggattttggaggatgaa
tctggaaaagcagcctggctcatgccactgtccaaagccagggactgctttttatggaag
atcagtgctctgacaggaccctgtgaccctggatcattctacactgcagacttaacccct
ccaattgaaccctggaagcctgtgcagaataagccagagaacctccagccaccagtgggg
tctcaccagccagaagtatcccagcaaactcatcctgacctcagttctcaggaacccatt
tgcacaaaggttggaggccaaacttctgatgaatccaaagcaggccccagaggagatggg
cagcttttatccccaagccagaaggacattcagaccctgcaggacctcgtggagttggcc
agggaaggactcacccttactcaatggaaccttgacactggccatgttcaggcagcagag
cagccaggagaagaactgactcccagcgatcctccacatagtggctttgtgcccccatcc
aaggagaagaaccttctcaggagcagcagtaaaacatcctctctcaggttgctggctcaa
gatttcggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggacagt
ggggacatcctctatgcccacctcttcgtgttgtacgcgcggtgtccggcggcggctcag
gctgtacacagcgaggggttggtggtggaggaggatggggctgcgccgacgcaccgggtg
ctgttgagcgacgtgtctgctgaggctgtggctgccttcctgcggtacctctatgctgct
gacaccaacttccctgctgggctgcggccccagctacgggctctggctgccagatttggt
gtgagggaactgatggcagagtgtgaaaacaacaatggagagagccaggtgtcctccgga
gtggattcagaagatgatcttatctctgtgagggatgaagaagattgtgaggacagagct
gagaacttccaagacctcttgaattcagtgtgggtgggtgaagatgaggaagaagtagct
atgctgaaccctgagtgccagaaggaagatgatagtgaggtaggagaacaagagctggag
gaaatctatgagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtgagc
aagggaacatgctgcagcatcagcagtgacaccgaggcagcccgaggtacaaaccagcaa
tctgaggaggaagaggtaaagagagctgaatctgcttcagtaagcaacagcctcaaaggt
ctgagggatggcaacagtgtggaaagatctgaatgtcacttgtctgcacaagaagagaag
atgcagaatataaataggtgcaagagcatgaatgatccagaggccactatagtgcctcac
cacagtgaacctcagaaatgggatggagcagcccatggtgctaatgaaggaggggctgtt
gaggggtgtaaggatgtgaaggattccaagtcacctcaggtctcacatgacaaggcagat
caccgtgaagagcagtttcctggtttccagggtgatactgatataaatgacagctatgaa
cgtttgttttctgcctctcagggggatcactgtgagccttccccagtgaaagaagttacc
aaagaatcaggaaagtcccctagtgaaaaacatgttggtctcaatgattctcttctgttc
agcaagtcacaaaaaggctgctctccgtgtaagaatggcttttgtgtcccttatgtgtct
ctttttcctgctcttggctcttcacctgcatctccaaaatcagagggaaactttgccagg
gaacatatgtcaacaccaaagcaaaacaaaaaggaaaaatcattcccatctgatgaaata
cactcccagaaagccaaggagcctggtgctgcatcaagaaacgagatcacagtttctcca
gctgagcttcctcacagcgaatcaaacaagcacgcacatgttccagtgttgtcatcacca
ggcaggactcaggatgctgcagctcaggggatcaaggagggtgatgttattgttttatct
tcttctgatgatgaaatggagttacaacaaggcaagaagttgctagaatctgactctgct
ctgaagaaaacggaaatccctgggctcctgaggtgtacagacatagaacaaagtcctgag
ataccaaaacctgaccataactcatcagtccctgaaacagagcagagatcaacccaggtc
tcatgtggcaatacagacacagtgtgtgtaagtggtgatgtaaaggtgtcccctgaattt
cctcgcagcagacaaacaggtgcttgtacagaaatcaaacagagtccaaacccgagccct
gggaaaaggctcagtcatgaattgtctccaggcacagactgcttctggttcgtgccagga
acaccagttctgagcaaaagcagaagcttcccaacacagactcaggtcacaagtattaat
tctgtaaagggtccagaatctaaactcagcacaaagaatgtagcagcaggtaatagtaac
catgaaatgactggaaagttaataaaagatcatgaaacaatgttgtcagacgaacatttg
cctagggagaactcatccaatgggaggagcccaccccacagcccagctgcagaatccttt
tccaagaactcccttccagtttctccagtggatccagttctcttctcccctggccacacc
aacacagaaagcaaatgtgccaatatctcaggtttacccacactggggcctccgttccag
gagcagccactggaagataaaacaaacatcagtgtggttgagctggaggacagtgacagg
gaagtaagtctgccttctctggggagcagtgtcctgctgtgtgaggagcccccaatccct
gttgatgactgctggcatgttgagtatctgtcaccagtcagaggtgacggccacgactct
ggccaggtcagccatgcaaagaccagcatggccagcagccccagccctgactcttggcat
gagcaggaggagagcccagtccaagtgcagggaattaagggcagcacccctctccaagga
agtcctgcttgcaggagaacaactttgcactgccctgagaagagccctattgagccatgt
tcatcagtgggcagcagagccagttacctggactccaaaatctgggatgactggaatgga
gaagagaaggaagatgaacttccagagattcttcctctgtctcagaggttggcagctgca
gcaggggcctgtcagtcagatcctgtcaagactcctgaaccttcctgtcaagagaacaac
gggtcccccagcactccagtgacacccatgccagcttactccatcatggagaccccacag
ctgaagaaggagctgagcagattcggtgtccgtgctctcccaaaacgccagatggtgttg
aagctgaaggagatattccagtacactcaccaggacagggactctgactttgaggatgaa
atcccctattcccagcccctcccacagaagtccccagccaaacagctgaggcagccgaag
gcaggccaggctgcgggcaggaatcgcgccccaagggctgtgggcaagaggaagcagcct
gccaaggcttctgcagtgctccctaggggtaaggctgatggtgcatcccatggaacaggc
tgtgccacacccaaggagggaactaacgtgccacatcacccagaaggtgccaaagagcag
gaaaggccacctgtgtccctggcagctgatggcaaggatctcccggcatcccaggagtca
gcagattcttcagtggatggaagtgacatctcctttggttcacagagttcctttgtgaat
ggatttgaaacctgtgcttttgcatctgaggaggaggaagaggagtttccagcatctcaa
gcagcagctcgggaagaggaaaagctggaggcaataaggtggtacatccgctcaaacacg
gccctgtacaacaggattcttttctatgagcccatcgagctggctgatctgcacacagag
ctcaaacagaatggcattaaaatttccaaggcaaagctgctgaactttctggattctcag
tgcatcacatctaccatggccaaagcccggaaagagaaggaacagaaaaggaaggggagc
agaaaacagagaaggcgataccaagtgaagcccactcctaccccctga
DBGET
integrated database retrieval system
