Aphelocoma coerulescens (scrub jay): 138118864
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Entry
138118864 CDS
T10543
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
138118864 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
acoe01001
]
138118864 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
acoe04054
]
138118864 (CIITA)
Enzymes [BR:
acoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
138118864 (CIITA)
Protein kinases [BR:
acoe01001
]
Serine/threonine kinases: Other
TAF1 family
138118864 (CIITA)
Pattern recognition receptors [BR:
acoe04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
138118864 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
NB-ARC
RsgA_GTPase
NPHP3_N
nSTAND3
AAA_19
Motif
Other DBs
NCBI-GeneID:
138118864
NCBI-ProteinID:
XP_068886240
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All DBs
Position
14:6774008..6801956
Genome browser
AA seq
1123 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCAFLDPKPSGDEEGDFSTDLEVDASSYEQLNNVDFP
CENGDALYPCSNTTDAYAKIAELVEYVLKDQQEKQVEDIFAGNLILDDIAAENTEKFPDI
KMQTCLKRTFLGSAESYCDASEPKYKKIVEVPAVSSGDGGFFAMPFNSHPVSCTSLTNQH
MSFSVPAAHGLERSFIISGLSEPLTSECLPLGMTGYQENPGLAGPPQQIFNFVLENATSD
VIVYPVLTSSMETFISPSFPVNLCAQHTYATSLGIPNEAAEELAHLEKSQEVQDSIIPSK
EPFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDGRLVQSQTETKTGKNSAKA
IEKELVTCNLQDKEKTAIDRSQIFQIPPHKDLETKVIVVLGKAGMGKSILIQKICHDWSN
GEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSTEIFEYILQNPTKVLLVFD
GFKGLHDHENSPRCSASQPEKDLCSIKELLSGLIQKKILNGCTLLFTARPKDKMYQCMSK
VDKTIEIVGFSPQQRELYITKYFEESPYCDSALNLIKECEYLFSHCYSPVMCRFVCFLCE
TVLEMGEKSLPSTLTEVFLKLFQQKIMLMQTDVTTTQNQESLATLARIAWCLGEKHQSTM
KSDLLPSKEVKEFALKYGFFLPFALPRHSDSEEEEFGSTFSDFAIQNFLCALHLLLAEEL
KDKNLTKYLSFLSKKKKPYNWLDLMPRFLAGLMFLQDDPYFCSLSNEDAKQSTKKQKTLL
KYIRRLQINTLCPERLLELLHCVYETQNNYLLQHVALRLEPYLSFLGIVLTPPDVHVLHS
ILKRSRKEFSLDLRNSGIDMQGLQALVSLRNVTSFRASLSDTVGLWKSLEQTKDYELLKA
STEKFVLDPFKAKTMKDISDLSDLVEMQEKMMNCVQGASGCTRYEIPAIRNLRKLEFALG
PACGLQGLLKLVKILAAFPSLRHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQN
KITDLGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKITG
VGAQQLTDSLRKCPHIKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatatcgat
ccgttgcatctgtgtgctttccttgatcctaagccatccggagacgaagaaggtgacttc
tctaccgatcttgaagttgatgccagcagctatgaacagttaaataatgtggatttccca
tgtgaaaatggagatgcattgtacccctgttccaacaccacagatgcgtatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggtcgaagacattttt
gcagggaaccttattttggatgacattgctgctgaaaacacggagaaatttcctgacata
aagatgcagacatgtcttaaacgaaccttcttaggctctgcagagagttactgtgatgct
tcagaacccaaatataagaaaattgtggaagtccctgcagtgtcttcaggggatggcggt
ttctttgctatgcctttcaacagccatcccgtgagctgcacctctctaactaaccagcac
atgtccttttctgttcctgctgcccatggactggaaagaagcttcatcatttctggattg
tcagaacctttgacctcagagtgcctaccactcggtatgacagggtaccaagagaatcca
ggtcttgcaggtcctcctcagcagatatttaacttcgttcttgaaaatgccacatctgat
gttatagtatacccagtgctgacatcttctatggaaacattcatatctccaagttttcca
gttaatttatgtgcacaacacacgtatgccacgagccttggaattccaaatgaagcagca
gaagaattagcacatttagaaaagtctcaagaagttcaagattccataattccttctaaa
gaacctttcaaaagaccagagcaagtggaaactttctgttcatcacttaaggattatttc
cgagacacgtgcaaatctgtgaccatggagcgggaagtaaatctggaccacctgttcatt
gatgggagacttgttcaaagtcaaactgaaaccaagactggaaagaatagtgcaaaagca
attgaaaaggagctggtaacttgcaacctgcaagacaaggaaaagacagccattgataga
agccaaatatttcaaatcccaccgcataaagacttagagactaaagtaattgtggtgctg
ggaaaagcaggaatgggaaaaagcattctcattcagaagatctgccatgactggtccaat
ggagagttttctcagtttgaatttgtattttggtttgactgcaaacaaataagcttgcct
gagaagcaatacagcctgaaggaactgctgcttgaattttttgtaaaacctcaagaggga
agcacagagatctttgagtatatattgcagaatcctactaaagtccttctggtttttgat
gggtttaaaggattgcatgatcacgagaattctcctcgttgctcagccagccagcctgaa
aaggatttgtgcagtataaaggagctgctttcaggactcatccaaaaaaagatactcaat
ggctgtactttattatttacagcaagaccaaaagacaaaatgtaccagtgcatgtccaaa
gtggataagactattgaaatagtaggattttcccctcagcagagagaattgtacataacc
aaatattttgaagaatcaccctactgtgatagtgcactgaatttaatcaaagagtgtgag
tacttgttcagtcattgttacagccctgttatgtgtagatttgtttgttttctctgtgag
acagtacttgaaatgggagagaaaagtcttccttcaactcttactgaagtcttcctgaaa
ttgtttcagcagaagataatgcttatgcaaacagatgttacaaccacacaaaatcaagag
agtcttgctaccctagcacgtatagcctggtgtcttggagaaaagcaccaaagcaccatg
aaaagtgacctccttccttctaaggaagttaaagagtttgctctgaagtatgggtttttc
ctgccatttgcactccccagacattcagatagtgaagaggaggaatttgggagcacattc
tctgattttgccattcagaatttcttgtgtgcacttcaccttttgttagcagaagagctc
aaggataaaaatctaacaaagtacctgtcttttctatccaagaagaaaaaaccttacaac
tggttagatttaatgcctcgatttttggctggtttgatgtttctccaggatgacccctac
ttctgctctctttcaaatgaggatgcaaaacaatcaaccaagaagcagaaaacactcttg
aaatacattagaaggctgcagattaataccctctgtccagagaggttgctggagctttta
cactgtgtttatgaaacacagaacaattatcttctgcagcatgtggccttaagactcgag
ccatacttgtcttttctgggcatagttcttacaccacctgatgtccatgtactgcattca
attttgaaaaggtcaagaaaagagttttccttggatttgcgaaacagtggcattgacatg
caagggctgcaagccttggtcagcctaaggaatgtgacatcattcagggcctccctcagt
gacacagtcgggctctggaaatctttagaacagacaaaagactacgaactgctgaaagca
tccacagagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcagtgac
ctctccgaccttgtagagatgcaggagaagatgatgaattgtgtgcaaggagcatctggt
tgcacccgctatgaaattcctgccatcagaaacctcaggaaactcgaatttgcgctgggt
ccagcatgtggccttcaaggattgctaaaactcgtgaaaattcttgcagcatttccatca
cttcggcatttagacctcgatgctctgagtgaaaatggcataggagatgaaggagcaaaa
agtctgtctgaagtgtttccaaccctgacatcactggaaacattaaatttatcacagaat
aaaataacagacctgggtgcagagaaccttgctacagctctcccttccttgtcctcctta
aaaacgctaagcttgtacaataacaacatttgtgattttggagcagaaaatctggcgaaa
gttcttcctgcaatgacatctttaagagtgctagatgttcagtataacaaaataactggt
gttggagcccagcagctgactgacagcctacggaaatgtccccatataaagaacttggtg
atgtggaatcccacaattccctatggagttcttgaacaccttcaccagctggactccagg
atcagtgtgtag
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