Aphelocoma coerulescens (scrub jay): 138118959
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Entry
138118959 CDS
T10543
Symbol
TNRC6A
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138118959 (TNRC6A)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138118959 (TNRC6A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
138118959
NCBI-ProteinID:
XP_068886450
LinkDB
All DBs
Position
14:complement(8548667..8593329)
Genome browser
AA seq
1905 aa
AA seq
DB search
METNTTFCSRELEAKATKEVERKLSRAFLPHLCGTERRDLVQEEEEQLMEERKKRKEDKK
KKEAAQKKAIEQKIKVPEQTKTSVSQPQPVTSNGTSTGTSTTNNAKRAPASSQQQPLPRY
PPREVPPRFRHQEQKQLLKRGQQLPVIAANLGSTPKVLNGQSGGSTGTNNQPVTNGEVPN
SSKKQPGMPPIRDLVSHSPNQSDLNHSGLGSHYENSHWGPVSSNSDSSTNWDKVIVDGSD
KEAWPSITGSDPELTSECMDTDSASSSGSERNLVIMASGSTGGESDGIRNGIGHGSQNKF
VVGSNSNNVGNGSINGPWGLSHGSIISTCQVSVDAPDSKSESSNNRMNAWGTINSSSNGG
LNPSTLNSNGNHGAWSVLENSGHALKGSVGSGSPGTSIQCSTIGQMANSQSINSKVGGSA
HGSWGSLQESCDSEVNGTRNVSFSGQPQNLNTEMNGPNNTTNFMTSSLPNSAGSVQMNEL
PNTAGPGAWRVSTMNHSQIQASPVANGTSISHLSNGEAKTGGSYGTTWGAYGSSYSGDKC
PGPNSQANGDTVNATLMQPGGSGPGSTNFQINGNKGGGVWEAGTVNSQNVPWGNGNGASA
GGSRRGWGNPAQNTGTNISNGEWSKLPSNQHSNEGVNGNSRKFTNGWKSTEEDDLNSQSS
AASQMAEQSSTWAKTGTGDSEGSSESTGCHEDRAAVEGQNRERRKVDQHTLLQSIVNRTD
LDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGGSVTQTSSSGGCVDRPSP
NNNDTSSVSGWGDPKSATRWGDSKGSNSQGGWEEDSAATVMVKSNQSWGSGKEEKSSWND
TPKMKQGWGDGQKASQGWAVSAGDSWGENSRSNHWGEAKKSSSGGSNSDRSVSGWNEPGK
SNSVTWGGNNAAPNSSSGWDEPAKSNQNQGWGDPPKSNQPQVWGDSSKPVNSPEWNKQDV
GSWGAPSAANKPPGSGWLGGPMPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSK
YNYKNVNMWNKNVPNSSSSSDQQAQVHPQLLSSSAMSSKESSSGSGWGEPSTPATTVDNG
TSAWGKPMDTGTSWGEPVSDAGGTSGWGNTSLGQQPPNKPGPKSMQDSWCGDDMPLTGSR
QTSWEEEEDVEIGMWNSSSSQEANPSLNWPPYMKKMPTKGIMKGGNKQDETWINPFIKQF
TNLSFSRESPEETIQSNKMDMSGGLLQDKRMEMDKHGLGVGDYNRVVGKGPGSRPQIPKE
SSMDRGPYFDKNGNPSVFGVGNIAAQPRSMQQPPAQPLNSSQPNPRAQVPPPLLSPQVPV
SLLKYAPNSGGLSPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQKAQPQRSMPSGGR
QQQEQQGRSLSMQQQMMQQSRQLDPNLLMKQQTPPSQQQSLHQPSMKSFLENVIPHATPE
LQKGPSPINAFSSFPIGMNSNLNVNLDMSSIKEPQSRLRKWTTVDSISVNTSLDQNSSKH
GAISSGFRLEDSPFVPYDFMNSSNSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEP
WKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIR
ASNYNVSLSSTAQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPG
LTGQKPPLSTWDNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTL
RTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEIS
RFFAQGQSLTPSPGWQSLGSSQSRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTS
LWGSPNYSTSLWGAPSSNDTRGISSPSPINAFLSVDHLGGGGESM
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaataccactttctgttccagagaattggaagctaaagctaccaaagaagtc
gaaagaaaactaagcagggctttcctgcctcatttatgtggaactgagagaagggattta
gtgcaagaagaggaagaacagttgatggaagaaaggaaaaagagaaaagaagacaagaag
aagaaggaagctgctcaaaaaaaggccattgaacaaaaaatcaaagtgccagaacaaacc
aagacaagtgtaagccagccccagcctgtcacctccaacggcacttccacaggaaccagc
actactaataatgccaagcgggccccagccagcagccagcagcagcccttgcctcgatac
cctcctcgggaagtaccaccgcgattccgacaccaggaacagaaacagcttctgaaacga
gggcagcagttaccagtgatagctgcaaacctgggatccactcccaaagtgttaaacggc
cagtcaggaggcagcactggcaccaataaccagcccgtgaccaacggagaagtgcccaac
agcagcaaaaaacagccaggcatgcctcccattcgggacttggtgagccactcccctaac
cagtcagatctgaaccacagtggtctaggatcccattatgaaaattctcactggggacca
gtctcttcaaatagtgactccagcacaaactgggataaagttatcgtagacggctctgac
aaagaagcatggccatcaatcactggcagtgacccagagctgacttcagaatgtatggac
actgactctgcctccagctctgggtcggagcggaacctcgttattatggcttcagggagc
acaggcggagaaagcgatggcattcgcaatggcatcggacatgggtctcagaataagttt
gtggttggtagcaacagcaataatgtgggcaatggaagtattaatgggccgtgggggtta
tcccatggatccataataagcacatgtcaagtttctgtggatgctcctgacagcaaatct
gaaagtagcaacaatagaatgaatgcttggggcaccataaactcttcatcaaatggaggg
ttaaatccaagcactttgaattcaaatggcaaccatggtgcctggtccgtgttggagaac
agtggacatgccctgaaagggtccgtggggagtgggagtcctggcacaagcattcagtgc
agtaccataggtcagatggccaacagccagagtattaactcgaaagtgggtggctcagcc
cacggttcctggggaagccttcaggaaagttgtgattctgaagtaaatggtacaaggaat
gtttcattcagtgggcaacctcaaaaccttaacactgaaatgaatggaccaaataacact
actaactttatgacctctagtttaccaaactctgctggttcggtgcagatgaacgaactg
cccaacactgcagggcccggggcctggcgcgtgagcacaatgaatcattctcagattcag
gcctctccagtggcaaacggcacttccatctctcacctgagcaatggtgaggccaaaact
ggcggctcttatggtactacctggggtgcctatggttctagttactctggagacaaatgt
ccaggcccaaacagccaagctaatggtgacactgtgaatgcaactctaatgcagccgggc
gggagcgggcctggcagcactaactttcaaatcaacgggaataaaggcggaggggtgtgg
gaggcagggacagtcaactcccagaatgtgccgtggggaaacgggaatggtgcgagtgct
ggcgggagcagaagaggatggggcaaccctgcacaaaacactggcaccaacatttccaac
ggggaatggagcaaactgcctagcaatcagcattccaatgaaggtgtgaatggaaacagc
aggaagtttacaaatggatggaagtctactgaggaggatgatctcaacagccagagttct
gctgcctcccagatggctgagcagagcagcacatgggccaaaacaggtacgggggacagc
gaagggagctcagagagcaccgggtgccatgaagacagagcagctgtggaaggccagaac
cgagagaggaggaaagttgaccagcacacattactccaaagcatagtgaacagaactgac
ttagatccacgtgtcctttccaactctggttggggacagactccaatcaaacagaacact
gcctgggatactgaaacatcaccaaggggtgaaagaaaaactgacaatgggacagaggcc
tgggggggctctgtgacacagacttccagctcaggggggtgtgtggatagacctagccct
aataataacgatacctcatctgtatcggggtggggagatccaaagtctgctacaaggtgg
ggagactccaaagggtcaaacagccagggggggtgggaagaagattctgctgctacagta
atggtcaagagcaatcaatcatggggaagtggcaaagaggaaaagtcatcctggaatgac
acaccgaagatgaagcagggatggggagatggacagaaggccagccagggttgggcagtg
tctgctggtgatagctggggtgaaaactctagaagtaaccattggggtgaggcaaagaaa
tccagttccggaggtagcaacagcgacaggtccgtgtctggttggaatgagccaggtaaa
tcaaattctgttacttggggaggcaataatgcagccccaaacagctcttcaggatgggat
gagcctgcaaagtctaatcagaaccagggctggggagaccctccgaaatccaatcagcct
caagtctggggggactcgtcgaagccagtcaattctcctgagtggaacaaacaagatgtt
ggctcttggggagccccgtctgccgcgaacaaacccccggggtctggctggctggggggg
ccaatgccagccccagcaaaggaggaagagcccacgggctgggaggagccatcccccgaa
tccatacgccggaaaatggagattgatgatggaacttctgcttggggtgatccaagcaaa
tacaactacaaaaatgtgaatatgtggaataaaaatgtcccaaacagtagcagcagttca
gaccagcaagcacaggtacatccgcagctactgtcttcaagtgccatgtctagcaaggag
agcagttcgggttctggttggggagagccttctactccagccactactgtagataacggg
acttcagcgtggggtaagcccatggacactggtacgagctggggagagcccgtcagcgat
gcaggaggcacctctggctggggaaacacttctcttgggcagcagcctccaaataaacct
gggcctaaatctatgcaagatagttggtgtggagatgatatgccattgactggcagtcgt
cagaccagctgggaggaagaggaggatgtcgagattggaatgtggaacagcagttcctca
caagaagctaacccatcgttaaactggccaccctacatgaaaaagatgcccacaaaggga
ataatgaaaggtggaaataagcaagatgaaacatggatcaatccattcattaagcaattc
acaaatctcagtttttcaagagaatcaccagaagaaaccatacagagcaataagatggac
atgtctggagggttactgcaggacaagcggatggagatggacaagcacggcctgggcgtg
ggagattacaatcgtgtggttggcaaaggccctggttctcgtccccaaattcccaaagag
tcttccatggatcgcggtccttacttcgataagaatggcaatcccagtgtgtttggtgtt
gggaatatagcagcacagcccaggagcatgcagcagcctccagcacaacctcttaattca
tctcagcctaatccacgtgctcaagtgcctcctccattactatcccctcaggttccagta
tcattactgaagtatgcaccaaacagcggtggcctgagcccacttttcggcccacaacag
gtagccatgttgaatcaactgtcccagttaaaccagctttctcagatctcccagttacag
cggctgttggctcagcagcagaaggctcagcctcagaggagcatgccttctgggggtcgg
cagcagcaggagcagcagggtcgatctcttagtatgcagcaacagatgatgcaacagtcc
cgtcagcttgatccaaacctgttaatgaagcagcaaactccaccctctcaacagcagtca
ctccatcagccctccatgaaatccttccttgagaatgtcataccccacgctacacctgag
ctgcagaaagggccgtcaccaatcaatgcattcagcagcttccctataggaatgaactca
aacttgaatgtaaacctggatatgagcagtattaaagagccacaatctcggctgaggaaa
tggactacagtcgacagcatttctgtgaacacatccttagatcaaaactccagcaaacat
ggtgctatttcaagtggttttaggctggaagattctccgtttgttccttacgactttatg
aacagcagtaattcgccagccagtcctcccggatccattggggacggctggccccgtgcc
aaatcgcctaatggctctagcagtgttaactggcccccagagtttcgccctggtgagcca
tggaaaggttatccaaacatcgaccccgaaactgacccttacgtcactcctggcagtgtc
ataaacaatctctcaattaatactgtgcgggaagttgaccacctcagggacaggaacagt
gggtcatcctcatctttgaacaccacgctgccttcaactagtgcctggtcatccattcgt
gcctccaactacaatgtttccctcagcagtacagcacaaagcacttcagtagccagaaac
agtgattccaaatcaacatggtctcctggatcagtcactaacacctctctggctcatgag
ctgtggaaggtccctttgccacctaaaagcatcactgctccatcccgcccacctccaggg
ctgacaggccagaaaccacccctgtccacttgggataattcccttcgtctgggtggagga
tggggaaattctgatgccagatacacccctggttcaagctggggtgagagcagctcaggg
agaataacaaattggcttgttctaaaaaaccttacacctcagatcgacggctcaaccctg
cgtactctgtgcatgcagcacggcccactaataacattccacctgaacctcccacatggt
aatgctttggtccgttacagttcaaaagaagaggtagtgaaggcacaaaaatctctgcac
atgtgtgttttagggaacactactattcttgctgagtttgccagtgaagaggagattagt
cgcttctttgcacaaggccagtccctgactccgtctcctggctggcaatctctgggatcc
agccagagccgactcggatccatcgatggttcccattcgttctcaaaccgtaatgatcta
aatcactggaatggtgctgggctgtcgggaactagcagtggagaccttcatggcacttca
ctttgggggagccccaactattccacgagcctgtggggtgccccgagcagcaatgacacc
aggggaattagcagcccatcccccatcaacgctttcctttccgttgaccacctgggtgga
ggtggagagtccatgtaa
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