Aphelocoma coerulescens (scrub jay): 138119143
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Entry
138119143 CDS
T10543
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03082
ATP-dependent chromatin remodeling
acoe03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138119143 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
138119143 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoe01009
]
138119143 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoe03021
]
138119143 (SMARCB1)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138119143 (SMARCB1)
Protein phosphatases and associated proteins [BR:
acoe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138119143 (SMARCB1)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138119143 (SMARCB1)
SWI/SNF complex
138119143 (SMARCB1)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138119143 (SMARCB1)
PBAF complex
138119143 (SMARCB1)
SWI/SNF complex
138119143 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
138119143
NCBI-ProteinID:
XP_068886811
LinkDB
All DBs
Position
15:9125844..9137202
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtcaagttccagctggag
gaggacggcgagttttacatgatcggctccgaggtgggaaactacttgcgcatgtttcgg
ggttccctgtacaagagatacccctcgctctggaggcgactggccacagtggaagaacgg
aagaaaatagtggcctcttcacatgaaaatcagcggtctcacagtccccgaagatatcat
ggctatacaacattagccactagcgtgacgctgttaaaggcctctgaagtggaggagatc
ttggatggaaacgatgagaagtacaaggcagtgtctatcagcacagaacctcctacctac
ctcagagagcagaaggcaaagaggaacaaccagtgggtgccaaccctgcccaacagctct
catcacctggatgcagtgccatgctcaacaacgatcaacaggaatcgcatgggcagggat
aagaagagaacattccctctgtgctttgatgaccatgacccagcagtgatccatgagaat
gcatcccagccagaggttctggttccaatcaggcttgatatggaaattgatgggcagaaa
ctcagagacgcatttacgtggaacatgaatgaaaagctaatgaccccagaaatgttctct
gagattctttgtgatgacctggatttgaatcctctgacctttgtccctgctattgcatct
gccatccgacagcagatcgagtcgtacccaactgacagcatcctagaagatcagtcagac
caacgagttattattaagctgaacatccatgtaggaaacatctcccttgtagaccagttt
gagtgggacatgtcagagaaggagaattcaccagagaagtttgccttgaagctgtgctca
gagcttggcctgggcggggagtttgtcactactattgcttacagtatccggggacagctg
agctggcatcagaagacatacgccttcagcgagaaccctttgccgactgtggagattgca
attcgcaacacgggggacgctgaccagtggtgccctctcctggaaaccctcacagatgcc
gagatggagaagaagatcagagaccaggacagaaacacaaggcgcatgagacgtttggcc
aatactgctccagcttggtaa
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integrated database retrieval system
