Aphelocoma coerulescens (scrub jay): 138119270
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Entry
138119270 CDS
T10543
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03030
DNA replication
acoe03410
Base excision repair
acoe03420
Nucleotide excision repair
acoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138119270 (RFC5)
03410 Base excision repair
138119270 (RFC5)
03420 Nucleotide excision repair
138119270 (RFC5)
03430 Mismatch repair
138119270 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoe03032
]
138119270 (RFC5)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138119270 (RFC5)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138119270 (RFC5)
DNA replication proteins [BR:
acoe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
138119270 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
138119270 (RFC5)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
138119270 (RFC5)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
138119270 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
138119270 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_24
AAA_22
AAA_11
AAA_assoc_2
DEAD
AAA_14
ResIII
RuvB_N
DUF815
AAA_5
AAA_30
AAA_19
PhoH
DNAX_ATPase_lid
AAA_7
TniB
TIP49
ATPase_2
nSTAND3
AAA_25
Thioredoxin_6
Gp44_lid
bpMoxR
AAA_28
Hydantoinase_B
Motif
Other DBs
NCBI-GeneID:
138119270
NCBI-ProteinID:
XP_068887033
LinkDB
All DBs
Position
15:complement(13577591..13580093)
Genome browser
AA seq
357 aa
AA seq
DB search
MAPAGSVNLPWVEKYRPQALSELVSHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTIL
ACARQLYREREFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMT
QDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQ
EEGVDVTEDGMKALVTLSSGDMRRALNILQSTFMAFGKVTEENVYTCTGHPLKSDIANIL
DWMLNQDFSTAYRQIMELKTLKGLALQDILTEIHLFVHRGGPRVRLPMILERPNFPLALT
ERFLLSTVDFPPSIRIQLLIKLADIEYRLAAGTSEKIQLSSLIAAFQVTRDLVVAEA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggcgggcagcgtgaacctgccgtgggtggagaaataccgtccgcaggcgctg
tccgagctggtgtctcaccgggacatcctcagcaccgtgcagcgcttcatcagcgaggat
cggctcccgcatctgctcctctatgggccacccggcaccgggaagacatccaccatcctg
gcctgtgccaggcagctgtaccgggagcgggaattcggctccatggtgctggagctcaac
gcctccgatgaccgcggcatcgacatcgtccgagggcccatcctgagcttcgccagcacc
aggaccatctttaagaaaggcttcaagctcgtcatcctggatgaagccgacgccatgacc
caggatgctcagaacgccctgaggagagtgatcgagaagttcacagaaaacacccggttt
tgcctcatctgtaactacctctccaagatcattcccgccctgcaatcccgctgcacccgc
ttccgcttcggccccctgaccccagagctgatggtgccgcggctccagcacgtcatccag
gaggagggggtggatgtgacggaggacgggatgaaggctctggtgactctctcgagcggg
gacatgcgcagggccctcaatatcttgcagagcaccttcatggcctttgggaaggtgaca
gaggagaacgtttacacctgcacggggcatcccctcaagtctgacatcgccaacatcctc
gactggatgctgaaccaggatttttccactgcctaccgccaaatcatggagctgaagacg
ctgaagggcctggccctgcaggacatcctcaccgagatccatctctttgtgcacagaggt
gggcccagggtccggctcccgatgatcctggagaggccaaacttccccctggccctcact
gagcgtttccttctctccacagtcgacttcccaccctccatccgcatccagctgctgatc
aagctggcagacatcgagtaccgcttggctgctggcaccagcgagaagatccagctgagc
tccctcatcgccgccttccaggtcaccagggacctggtggtggccgaagcctga
DBGET
integrated database retrieval system
