Aphelocoma coerulescens (scrub jay): 138119556
Help
Entry
138119556 CDS
T10543
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138119556 (SETX)
5.6.2.5 RNA 5'-3' helicase
138119556 (SETX)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138119556 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138119556
NCBI-ProteinID:
XP_068887657
LinkDB
All DBs
Position
17:complement(6832344..6858435)
Genome browser
AA seq
2823 aa
AA seq
DB search
MEAANQMSTCRWCTQSGADTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKSREE
CPRLHEDLWDLETSRLVAHMEKSMNEETGEDDELFLIDENGETRLSGYVGPNFENNLRVP
LLEILKYPYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAIL
TARNLGKVDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTAN
YKNYWLGICMLLSVLEEQAMDSLLLGPEKQNDFMQSILHTMEKEAADDSTDPFWPALHCF
MVILDQLGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISC
SQIVYNYNTEKPQKDAGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHSTFLWFI
PFVQSLMDLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSK
KCLHLLWISSQEWVEAVVRCATLPSRAFTRCSEKAPGLCAKGSGAGLFQAPNSVQHACVQ
LIRSLLKEGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQMCLKQVIRSING
KALSASLAGGSSSNSTALPTISIKHERNACGDGYKMSGHEREDLYSPFVMSKEGRDCQEN
PFHRRRNAWEEECRDASRSSTSCTSTEGLLMNIKKEPDNLTAQECIFPQNSLPTKEGGKV
QENRNYDLVAGKCNVDDQCFNSNAQHSDFRRGRELEIKQEAEPRTPPHLSAQTHLDSLSS
RNCKSMQETSVNSVFQSTLVPTKQMSKEVSLDSSNSRNEPGVQGKEDDSTLLLGCNDTSP
KKVSTEEKSASSLMSFSRKNSNMQTSNQEQPNLKDLDKYDCKNQTSETFCRDKISAYGYF
PFSSENKRDMIRPLSVKRESSDRLFEFSEYFKRENSSVGNKEEDSVKTVSKDDALSDSQV
DRELSKLSLAAYAKSVNFSVVSSQESSAYHNVSDIKRKVKGTVRSSNEGQSTRCPCGAVG
PNNQVIVISDSSDEEKSMSDKEEIKTKNENVCAGQSSASSSISDSDTKRESKSPGSPTLL
DDCDSQYFEFETEAEVFSAWQDTQAYAVETTQEYKQDHVKPAAERSNSDEFQNNNLDFWG
YDLDYLSDDTMEEAASSIEKQTEGISHQKVVDDTKEATNSTLQELVSKEDAKGQLEKCVD
KGTAKGFTLDSKLPEPKASTSPLSLASKLALKKNSTSPRKTTAKCKSALAVQRSPKKPPV
VKTAKNKTPLQSMPERSQPGRSMPAVVPPRKVRQSPAPASTVEKLGLKKGPRKAFDLSQP
SLESLVLLRSHGKAAGRIGVAQKKRTQQIEAQRLSVKHNKKLLICQDRRYSREARSKRSV
KTSAGSLESRNKVTKAGAKPGGKKPQSFELASLKESAENQREKKREEAACASASERKFES
LSMEEVASASKMPRSSDWNRKWEGNSVGVSPVPMDSSLSSTALGDDKNESSGKGCTVLPE
CEMKTSKQNGCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDAAVSSKTPEEMDVDE
SLQQNEPSAVVKCNYKDCMEKVEKPGEYCSKHTATSPGADHVFAKPSLLPPKIRKPSTTK
IFSSASSSRNAAFSKDLEDVRKLPPPSKSKVNAAKPVVVRPPLYPKPAPAGNPTYKSPSF
SNVPQALSTNNVLQSQNRRYDNASNISRGPGRETYSSFLGAQQRDHSIFVNQVLKWTYEM
FANFSHFGTPNNLLQSVVASVPVQFQGYNDYFNTFFPLMMLNAFETLAQEWVENQKVREK
SYCFYLQNFSADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEESGMENHK
VNHVGLVTRFSRPSGYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKF
KGLLLLSRSPLAKPIINPSYNDFCPRDLPVASGSAASYMNEYNEDQKRAIETAYAMVKQH
PGLPKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTAREKNSKIKPNRFLVCAPSNAA
LDELMKKIIIAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRK
PGDCDQDIQKKKEALDQKLDMLSRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEV
RVHSQKVQADIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLI
PLIHRCNKLVLVGDPKQLPPTVKSLKAQQYGYDQSLMARLQRHLEEQVQRNVLRSLPVVQ
LTVQYRMHPDICLFPSNYVYGRTLKTAKAIEENRCSSDWPFQPYLIFDVADGREERDNDS
YSNPREVKLVMELIRTIKEKRKDLGIRRIGIITPYSAQKKKIQEQLESVFKNNSPGEVDT
VDAFQGREKDCIIVSCVRANSSEGSTVACVLANSTKGSIGFLASLQRLNVTITRARFSLF
ILGRLQTLMEDKNWNNLIQDAQKRGAIIRTTEKNYKKEALRILKLRPPGQLPAKGGTVSS
VAQAGSSSGKRSEPGNSGNSPRELAAGPGHAVPQGTQGPTQPPGTLSADSRRGSAPASSG
AAAVDSRRGNVPASSGAAAADSRRGNVPAFSGAAAVDSRRGSAPASSGAAAVESRRGSTP
ASLGAAAADSRRGSAPASSGAAAADSRRGSTPASSGAVALAAIPEKPRDPRLASLASRTE
AKGKEQPLKDGHRSAQSNPGSTPQQGLDMSSAARDQICRTENAKKAQQTPGQCNVFPTAP
PTAQHEGDQRAAVSKSSSKAPSEGGQSSSSEWNRDPRGLSRRPSQESPENTDSSSAKRRK
IFP
NT seq
8472 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgctaaccaaatgagcacatgccgatggtgcacacagagtggtgctgacacc
accgagttcctgaagcactatgctgctcaaagactgtcccaggaagattttgaaggatcc
aatgatgacctctgttactgcctggagtgtgtggttgaataccacaaatcgagggaagaa
tgtccaagattgcatgaggacttgtgggacttggaaacctcccgccttgttgcccacatg
gagaaatccatgaatgaagaaactggagaagatgatgagttgtttctgatagatgagaat
ggggagacacgtctgtctggatatgtgggcccaaattttgagaacaacctgcgagtgccc
ctgctggaaatactgaaatacccctatctgctgctgcataagaaagtcagtgagctgtgt
gtagaagtgctctgtagaatggaactaagtcacgactcctttcaggtctttgagaaatac
ccaggaatctatctctttttggtacacccaaatgaggtgattcgtcgatgggcaatccta
acagcaaggaatttagggaaggttgacagggatgattactatgacttagaggaagtgctg
acttgtttgttcaaagttattgagttggggctttttgagaatccagatatttacagctct
tcaatgtttgaaaagggtaaactcatccttctgccagctcatttgtatgatacagccaac
tacaagaactattggctggggatctgcatgttgctgtcagtgctggaagaacaagccatg
gactcgttgttactgggccctgaaaaacaaaatgatttcatgcagtctatacttcacact
atggagaaagaagcagctgatgattccactgaccccttctggcctgccctgcattgtttc
atggttattttggatcagctcggatctaaagtttggggtcagcttattgatcctgtccaa
gcctttcaaaccataataaacagtgtgagctacaacaatgaaatcaaaaatattcgcagt
agttttaggaggacaaaatctgaaccagagtcagactacggtgatgacatgatttcttgc
agtcagattgtgtataattataacacagaaaagcctcaaaaggacgctggatggaaagct
gccatttgcccagagtactgccccaacatgtatgaagatatgcagaccctggctaacatg
cttcagtctgacattggcagagatatgcgtgtccatcacagcacgttcctctggttcatc
ccctttgttcagtcccttatggatctcaaggacttgggtgtagcctatatagtagaggtc
atccactacctctgctcagaaatcaaagacatcctcatcgaacgaatccagcagtgcgac
aaaatctctgagttcttcctcctcatcttagtgtccattgttgagctgcacagaagcaag
aagtgcctgcatttgctgtggatcagctcccaggagtgggtggaggcagtggtgaggtgt
gctacactgcccagcagagccttcacgcggtgcagtgagaaggcgccggggctgtgtgcc
aagggctcgggcgcggggctgttccaggccccgaactcggtgcagcacgcctgcgtgcag
ctcatccgcagcctgctcaaggagggctaccagatcggccagcacgccctctgcaagcag
tacctggacaaactcaacctcctcctgcggggaaatcgagctgtggggtggcagctgagc
agccaggaaacccaggagctgcaaatgtgtttaaagcaagttataagaagtataaatggc
aaagcactgagcgcctctttggctggaggaagcagttcgaactcaacagctttgccaacc
atctctataaagcacgagaggaatgcatgtggtgatggatacaagatgagtggacatgag
agagaggacctttattcaccatttgtcatgtcgaaggaaggcagagattgtcaagagaac
cctttccataggagaaggaatgcctgggaagaggaatgcagagatgcatctagaagttca
acatcttgcacatccacagaaggcctcttgatgaatattaaaaaggaacctgataacttg
acagctcaggagtgtatcttcccacagaactcactgccaacaaaagaaggtgggaaagtt
caggaaaataggaactatgatcttgtggcagggaaatgcaacgtggatgatcagtgcttt
aattcaaatgcccagcattcagatttcaggagaggcagagagttagaaatcaaacaggaa
gcagaacccagaacaccaccccatctgtctgctcaaactcatcttgattccctatcttca
aggaattgcaaaagtatgcaggagacaagtgtaaacagtgtgttccagtccacactggtc
cctactaaacagatgtccaaggaagtatcactagattcctctaactctagaaatgaacct
ggtgtgcaggggaaggaagatgacagtactttgcttttagggtgtaatgacacctcaccg
aaaaaagtatcaacagaagaaaaatcagcttcatcgttgatgtctttctctaggaaaaac
tctaacatgcaaacttcaaaccaggagcagcctaatttaaaagacttggataaatatgac
tgcaaaaatcaaacttctgagaccttctgtagggataaaatttcagcatatggttatttt
ccatttagctctgaaaacaagagggatatgatcaggccactgtcagtgaagcgtgaatca
agtgacaggttgtttgagttttcagaatatttcaagagggagaacagttcagtggggaat
aaagaggaggattctgtgaagacggtttctaaagatgatgctttatcagactcccaggtt
gatagagagctcagtaaattatctttagctgcttatgctaaaagtgtcaatttttctgtt
gtgtccagccaggaaagctcagcgtaccacaatgtgtctgatattaaaaggaaagtgaaa
ggtactgtaagatcttccaatgagggccaaagtaccaggtgtccctgtggtgcagttggc
cctaacaatcaagtcattgtaatttcagactcttctgatgaagaaaaaagcatgtctgac
aaggaggaaataaaaaccaagaatgaaaatgtgtgtgcagggcagtcttcagcttccagc
agcatttctgatagtgacactaaaagagaatcaaagtctccaggctctcccacgttactg
gatgattgtgattctcagtactttgaatttgaaacagaagctgaggttttttcagcttgg
caagatactcaagcgtatgctgtggaaacaactcaggagtataaacaagatcacgttaaa
ccagcagctgagaggagtaattcagatgagttccagaacaataacttagatttctggggt
tatgatctggattacttaagtgatgacaccatggaagaagccgcaagctcgatagaaaag
cagacagagggtatttctcatcagaaagtagttgatgatacaaaagaagcaactaattca
accttgcaagaattagttagtaaggaagatgcaaaaggtcagctggagaaatgtgtagac
aaaggtactgctaaaggcttcactctggactcaaaattgcctgaacccaaagcatctaca
tctcccctctccttagcttccaagttggcccttaagaaaaacagcacaagcccacggaag
accacagcaaaatgtaaatcagcactggctgttcagagaagtcctaaaaaacctccagtt
gttaaaacagccaaaaataaaacaccacttcaaagcatgccagagcgttctcagcctggc
aggtcaatgcctgctgtggttcctccaagaaaagttcggcagagtcctgctccagcatcg
actgtggaaaagctgggcctgaagaagggcccccgcaaggcgtttgacttgtcccagccc
tccctggagagcctggttctgctgcgcagccacggcaaagctgcaggcagaattggagtt
gcacagaaaaagaggacccaacagatcgaggctcagcgtttgtctgtgaaacataataaa
aaactgctcatctgccaagaccgtcgctattcaagggaggcgaggtccaaaagaagtgtg
aaaacttctgcaggaagtttggagagcagaaacaaagttacgaaagcgggtgcaaaacct
gggggaaaaaagcctcaaagttttgaactggcatctcttaaagaatctgctgaaaaccaa
agggagaaaaaaagagaagaggctgcttgtgcctctgccagtgagagaaaatttgagagc
ctctctatggaggaggtggcaagtgcctctaaaatgcctcgttcttcagactggaacaga
aaatgggagggtaacagtgtgggggtttctcctgtccctatggattcaagtctctcttcc
actgcacttggagatgataaaaatgagtcttcaggaaaaggttgcactgtcctgcctgag
tgtgagatgaaaacttcaaagcaaaatgggtgtaaatcagatgaaagcagtgacgaaggt
gatgataatctgtttttaactcagttagatcctgtggatatggagttatgctctcaggag
gaaagtgttcaagatgctgctgtaagtagcaagaccccagaggaaatggatgttgatgaa
agtcttcagcagaacgaaccctcagctgttgtgaaatgtaactacaaagactgtatggaa
aaggtggaaaaacctggagaatactgtagtaaacacacagccaccagcccaggggcagat
cacgtgtttgccaagccttctctcctgccacctaaaataagaaagccttccactaccaaa
attttcagctcagcaagttcctcacggaatgcagccttcagcaaagatcttgaggatgtc
cgaaagttacccccaccttcaaaaagcaaagtgaacgcggccaaaccagtggtggtcagg
ccaccactgtacccaaaacctgcaccagcaggaaatccaacgtacaaatctccaagtttc
agtaatgtacctcaagccctcagtaccaataatgttctccagtcacaaaatagacgctat
gacaatgcttcaaatatttccagagggcctggccgagaaacctactcctcctttcttggc
gctcagcagcgcgatcacagcatttttgttaaccaagtcctaaagtggacttacgaaatg
tttgcaaacttcagccactttggaactcccaataatcttctgcagtccgtagtagcctct
gttcctgtccaatttcagggctacaatgactattttaatacgtttttccccttgatgatg
ctcaatgcctttgaaacactggcacaagaatgggtagaaaaccagaaagtaagagagaaa
agttactgcttctacttacagaacttttctgctgacatgaatacagcacattttacagct
catttacgagagagtgatttggcaaggcagcttcatccaaaggaggatgacttaatcctt
ttggtggtccacaaggagaaggacacttttggggaagaaagtgggatggagaaccacaaa
gtgaatcatgttggccttgtgacacgattttctcgtccatctggctatgcaaatagacaa
aaggagcagcaaactgcctgtcatcttactgtgcaaacccgaggcaatctgtcgttcttc
atccataagcaagtgaagtgtgtggtggttggctccctagtgaccacacacagaaagttc
aaaggtcttctgctgctgagcaggagccccctggctaaacccatcataaatccaagttac
aacgacttctgtcccagagatctgcctgtagcctcaggaagtgctgcttcatatatgaat
gaatacaatgaagatcaaaagagagccattgagacagcttatgccatggtaaagcaacac
ccaggacttcccaaaatctgccttatccatggaccacctgggacagggaaatcaaaaact
attgtaggacttctgtcccgtgttttgagagaaaacactaggaatgagaaaacagctcgg
gaaaaaaattccaagattaagccaaaccgttttctagtctgtgcaccatcaaatgctgct
cttgatgaactcatgaaaaagatcatcattgcatttaaggaaaaatgccaaaacaaacag
gagcctttgggaaattgtggtgatatcaaattagtgcgacttggtgctgaaaaatcaatc
aacagtgaagtccgggggttcagcctggataagcaagttgaacacagaatgaaacgaaag
ccaggtgactgtgaccaggatatccagaagaagaaagaagctctggatcagaagctggat
atgctttctcgagagcgtgccatgcacagatgtgagaaaagagagagtcaaatgttaaat
gatgaaattggcagacttgcaaaggagagacaacaacttgcttctcagctaaaggaggtt
cgggtgcactcccagaaagtgcaggcagacatcatcctggagtctgacatcatctgctgc
acgctgagcaccagcggggggagcctgctggaatcggccttctcacggcaggggctcgat
cccttcagctgtgtcatcgtggatgaggcagggcagtcctgtgaggtggaaacactgatt
ccactgatccatcgctgcaataaacttgtccttgttggagatcccaaacagctccctcct
actgtcaaatcactaaaagctcagcagtatggctacgaccagtccttgatggcccgtctg
cagaggcacctggaggagcaagtgcagaggaacgtgctccgcagcctgcccgtggtgcag
ctgaccgtgcagtacaggatgcacccggacatctgcctcttcccatccaactatgtttat
ggcaggactctaaagactgccaaggcaatagaggagaacagatgttcttcagattggcca
ttccagccctacctgatttttgatgtagctgatggtcgtgaggagcgagacaatgactct
tacagcaatcctcgggaagtgaagctggtgatggagctaattagaacaattaaagaaaaa
aggaaggatctgggcattcgtcgcattggaataattaccccttacagtgcccagaaaaag
aaaattcaggaacaactggaaagtgtgtttaagaataacagcccaggagaagtggacaca
gtggatgcgttccagggccgggagaaggattgcatcatcgtgtcctgtgtgcgggcaaac
agctccgaaggctccactgtggcatgtgtgctggccaacagcaccaaaggatccattggg
tttctggcaagcctccagcggctgaatgtcaccattacccgagcccgcttcagcctcttc
atcctgggccggctgcagacgctcatggaagataaaaactggaataacttgattcaggat
gctcagaaaagaggtgccattatcaggacaacagaaaaaaattacaagaaagaggctctg
aggattttgaagctcaggccaccaggacagctcccagccaaaggagggacagtatcttct
gtagcacaggctggttcttccagtggcaagaggagtgagcctggaaattctgggaacagc
ccacgggaacttgctgctggccctggccatgcagtaccccaaggaacccaagggcccaca
cagcctccagggactctgtctgcagattccaggaggggcagtgcccctgcatcctcgggg
gctgcagctgtagattccaggaggggaaatgtccctgcatcctcgggggctgcagctgca
gattccaggaggggaaatgtccctgcattctcaggggctgcagctgtagattccaggaga
ggcagtgcccctgcatcctcaggggctgcagctgtagaatccaggaggggcagcacccct
gcatccttgggggctgcagctgcagattccaggaggggcagtgcccctgcatcctcgggg
gctgcagctgcagattccaggaggggcagcacccctgcatcctcgggggctgtagcactt
gctgccatcccagagaaaccacgggacccaaggctggccagcctggccagtcgaactgaa
gccaaagggaaagagcagcccttgaaggacggccatcggtcagcccagagcaatccagga
tcaacaccacagcaaggcctggacatgtcctcagctgccagggatcagatttgcagaaca
gaaaatgccaagaaggcccagcaaacaccaggacagtgcaatgtgtttcccacagcccct
cccacagctcagcacgagggggaccagagagcagctgtgtccaaaagtagttccaaagcc
cccagtgaaggaggtcagagcagtagcagtgagtggaacagagaccctcgtggtttatca
aggagaccatcccaggaatcaccagagaacacagactcaagctctgccaagagaagaaag
atctttccctga
DBGET
integrated database retrieval system
