Aphelocoma coerulescens (scrub jay): 138119609
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Entry
138119609 CDS
T10543
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04510
Focal adhesion
acoe04512
ECM-receptor interaction
acoe04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138119609 (TNC)
04518 Integrin signaling
138119609 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138119609 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acoe00536
]
138119609 (TNC)
Glycosaminoglycan binding proteins [BR:
acoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138119609 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
Fn3_VIN3
DUF7949
EGF
Interfer-bind
NDNF
Fn3_R-PTP-O
hEGF
Big_5
Motif
Other DBs
NCBI-GeneID:
138119609
NCBI-ProteinID:
XP_068887783
LinkDB
All DBs
Position
17:complement(2571069..2643103)
Genome browser
AA seq
1775 aa
AA seq
DB search
MGLPSWVLACAILPLLSQHVTGGLIKRIIKKRETGLNMTLPEDNQPVVFNHVYNIKLPVG
SLCSVDLDTASGDADLKAEIEPIKNYEEHTVNEGNQIVFTHRINIPRRACGCAAAPDIKD
LLSRLEELEGLVSSLREQCASGAGCCPNSQAVEGRLDTTPYCSGHGNYSIEICGCVCEPG
WKGPNCSQASCPSDCNDQGKCVDGLCVCFEGYTGPDCSQELCAQGCGAHGRCVGGRCLCH
EGFVGEDCSVPLCPHNCHGRGRCVDSECVCDEGYTGEDCSELICPNDCYDRGRCVNGTCF
CEEGFTGEDCGELTCPNNCHGNGRCENGLCVCYEGFVGDDCGQLRCPNDCHNRGRCVGGR
CVCHEGYLGEDCAELRCPNDCHNRGRCENGQCVCHEGFIGEDCGELRCPNDCHNRGLCVN
GQCVCHEGFTGDDCGQLRCPSDCHNRGLCVNGQCVCHEGYTGEDCAERSCPHDCHNRGRC
VEGQCKCDNGFTGEDCGELACPNDCHGRGRCVDGRCVCHEGFVGEDCRERSCPNDCNNAG
RCVDGRCVCEDGYIGDDCSDVSPPTELTVTNVTDKTVNLEWKHENLVNEYLVTYVPTSSG
GLDMQFTVPGNHTAATIHELEPGVEYFIRVFAILKNKKSIPVSARVATYLPAPEGLKFKS
VRETSVQVEWDPLNFSFDGWELVFHNMKKDDNGDITSSLKRPETSYMQPGLAPGQQYNVS
IHIVKNNTRGPGLSKVITTKLDAPSQVEAKDVTDTTALITWSKPLAEVEGIELTYGPKDI
PGDRTTIDLSEDENQYSIGNLRPHTEYEVTLVSRRGDMESDPVKEVFVTDLDAPRNLKRV
SQTDSSITLEWKNSHANVDNYRIKFAPISGGDHVEITVPKGSQATTRATLTGLRPGTEYG
IGVTAVRNDRESAPATINAGTDLDNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLVYTGP
SGKKSEVEVPVDSTSFLLRGLDAGTEYTISLQAEKGRHKSKPTTVKGSTEEEPELGGLSV
SKTGWDGFQLTWTAADGAYENFIIQVQESGNPEETRNVTVPGALSSVNVTGLKANTPYNI
TLQGVTRGYRTKPLSLETTTGEQPGVAELMVSDITPESFNLSWTASNGDFDVFTIEIIDS
NRLLEPMEFNVSGNSRTAHISGLSPSTDFIVYLSGISRGFRTQAISAAATTEAEPEVDNL
LVSDATPDGFRLSWTADDGVFNSFVLKIRDAKRKSDPLELIVPGHERTQDITGLKEGTEY
EIELYGISSGQRSQPVNAVASTVVGSPKGISFSDITENAATVSWTPPRSRVENFRISYVP
VTGGTPNVVTVDGSKTRTKLVKLVPGVDYNVSIISVKGFEESEPISGTLKTALDSPSGLV
VVNITDSEALATWQPAIAAVDNYVVSYSSEEEPEVTQMVSGNTVEYDLKGLQPATEYTLS
VHALKDTQRSETLSTHFTTGLDAPRDLSATEVQSEAAGISWRPPRAPVTGYLLIYESIDG
RVKELILNPETTSYSLTELSPSTQYTVKLHALSGALRSKTIQTIFTTTGLLYPYPKDCSQ
ALLNGEATSGLYTIYLNGDKAQPLQVFCDMGEDGGGWIVFLRRQNGKQDFYKNWNTYVAG
FGDPKDEFWIGLENLHKITSQGQYELRVDLRDKGDTAYAVYDRFSVGDAKSRYRLRVDGY
SGTAGDSMTYHNGRSFSTFDKDHDSAITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQG
VNWFHWKGHEYSIQFAEMKLRPSSFRNLEGRRKRA
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccagctgggtcttggcctgcgccatcctccctttgctgtcccagcacgtc
actgggggactcatcaagagaattatcaagaagagggagactgggctgaacatgaccttg
ccggaggacaaccagcctgtggtttttaaccatgtctacaacattaagctgcccgttggc
tccctctgctctgtggacctggacacagcgagcggcgacgctgacctgaaggcggaaatt
gagcccatcaagaattacgaggagcacacggtgaatgaggggaaccagattgtcttcact
cacaggattaacattccccgccgggcttgtggctgtgcagctgccccagacattaaggat
ctgctgagcagactagaggagctggaggggctggtctcctccctgcgggagcagtgtgcc
agcggggctggatgctgtcctaattcccaggcagtagaaggtcgcctggacaccacgccc
tattgcagcgggcacggcaactacagcatcgagatctgcggctgcgtctgcgagcctggc
tggaagggccccaactgcagccaggcctcgtgtccctccgactgcaacgaccagggcaag
tgcgtggacgggctgtgcgtgtgcttcgagggctacacgggcccggactgcagccaggag
ctctgcgcccagggctgcggcgcccacgggcgctgcgtgggcgggcgctgcctgtgccac
gagggctttgtgggtgaggactgcagcgtgcccctgtgcccccacaactgccacggccgc
gggcgctgcgtggacagcgagtgcgtgtgcgacgagggctacaccggcgaggactgcagc
gagctcatctgccccaacgactgctacgaccgcgggcgctgcgtgaacggcacctgcttc
tgcgaggaggggttcaccggcgaggactgcggggagctcacctgccccaacaactgccac
ggcaacgggcgctgcgagaacgggctgtgcgtgtgctacgaggggtttgtgggcgacgac
tgcggccagctgcggtgtcccaacgattgccacaaccgcgggcgctgcgtgggcgggcgc
tgcgtgtgccacgaggggtacctgggcgaggactgtgcggagctgcggtgtcccaacgac
tgccacaaccgcgggcgctgcgagaacgggcagtgcgtgtgccacgagggcttcatcggg
gaggactgcggggagctgcgctgccccaacgactgccacaaccgcgggctgtgcgtcaac
gggcagtgcgtgtgccacgagggcttcaccggggacgactgcggccagctgcggtgcccc
agcgactgccacaaccgcgggctgtgcgtcaacgggcagtgcgtgtgccacgaggggtac
acgggcgaggactgtgcggagcggagctgcccccacgactgccacaaccgcgggcgctgc
gtggagggacagtgcaagtgtgacaatggcttcacaggagaggactgcggagagctggcc
tgccccaacgactgccacgggcgtgggcgctgcgtcgacgggcgctgcgtgtgccacgag
ggcttcgtgggcgaggactgccgggagcgctcctgccccaacgactgcaacaacgcgggg
cgctgcgtggacgggcgctgtgtctgcgaggatgggtacatcggggacgactgctctgat
gtgtctcctccaactgagctgactgtgaccaacgtgacggataaaactgtcaatctggag
tggaagcatgagaacctcgtcaatgagtacctcgtcacctacgtccccaccagcagtggg
ggcttggacatgcagttcaccgtgccaggaaaccacacagctgccaccatccatgagctg
gagccgggggtggagtactttatccgtgtctttgcaatccttaaaaacaagaagagcatt
ccagtcagcgccagggtagccacatatctgcctgctccagaaggtctgaaattcaaatct
gttcgggaaacgtccgtccaggtggagtgggaccctctgaacttttcttttgatggctgg
gagctggtcttccataatatgaaaaaggatgataacggtgacataaccagcagcttgaaa
aggccagagacatcctacatgcagccaggtttggcacctgggcaacagtacaatgtgtcc
atccatatagtgaagaacaacaccagaggtccaggactgtccaaagtcatcaccacaaag
cttgatgcccccagccaggtggaggccaaagacgtcaccgacaccaccgctctcatcacg
tggtccaaacccttggctgaagttgagggcatagagctcacctatggccccaaggacatt
ccaggggacaggaccaccatcgacctctctgaggacgagaaccaatattccattgggaac
ctgaggccgcacacagagtatgaggtgacgctcgtctctcgacgaggggacatggaaagt
gaccctgtgaaggaagtctttgtcacagacctggatgctccaaggaacctgaagagggtg
tcccagaccgacagcagcatcaccttggagtggaagaacagccacgccaatgtcgataat
taccgaattaagtttgcccccatctctggtggggaccacgtggagatcacagtgcccaag
ggcagccaggccacaaccagagctacactcacaggtttgaggcctggaactgaatatggc
attggagtgacagcagtgaggaacgacagggaaagtgctcctgctaccatcaatgctggc
actgatctcgataaccccaaggacttggaagtcagcgaccccactgaaaccaccttgtcc
cttcgctggagaaggccagtggccaagtttgaccggtaccgcctcgtttacaccggcccc
tccgggaagaagagcgaggtggaggtccctgtggacagcacctccttcctgctgcggggg
ctggatgcgggcacagagtacaccatcagcctgcaggcagagaagggcaggcacaagagc
aaacccaccactgtcaagggttccacggaggaggaacctgagctgggaggattatcagta
tcaaagactggctgggatggtttccagctcacctggacagcagccgacggggcctatgag
aactttatcattcaggtgcaggagtctggcaaccccgaagaaacccggaatgtcacagtc
ccgggggcactgagctctgtgaatgtcaccggcctcaaggccaacactccttataacatc
acccttcagggggtcactcggggctacaggaccaagcccctttctcttgagaccaccaca
ggagagcagcccggcgtcgctgagctaatggtttccgacattactcccgaaagcttcaac
ctctcctggacagcctccaacggggactttgacgtctttaccattgaaattattgattct
aacaggttgctggagccgatggagttcaatgtctcaggcaactcaaggactgctcatatc
tcagggctttctcccagcactgatttcattgtctacctctccgggatctctcgcgggttc
cgcacacaggcaatcagtgccgcagctaccacagaagcagaacccgaggtcgacaacctt
ctggtttcagacgccactccagatggattccgtctctcctggactgcagatgacggggtt
ttcaacagctttgttctaaaaatcagggacgccaaaaggaaatctgacccactggagctg
atagtgccaggccatgagcgcacccaggacataacagggctgaaagagggcactgaatat
gagattgagctctatggaattagcagtggacaacgttcccagcccgtaaatgcagtagca
tccacagtcgttggctctcccaaaggaatttctttctctgacatcacggaaaacgccgcc
acagtcagctggaccccccctcgctcccgtgtggaaaacttccggatctcctacgtcccc
gtcacgggaggtactccaaatgttgtcacggtcgatgggagcaagacaaggaccaagctg
gtgaagttggtcccaggtgtggactacaatgtcagcatcatctctgtgaaaggctttgag
gaaagcgagcccatctctggcaccctgaaaacagctttggacagcccgtcaggcctggta
gtggtgaacatcacagactcagaggctctggcaacctggcagccagcaattgcagctgtg
gataactatgtggtgtcctactcttctgaggaagagccagaggtgactcagatggtctca
gggaacaccgtggagtatgacctgaaggggctccagcctgccaccgagtacacgctgagc
gtccacgcgctgaaggacacgcagaggagcgagaccctctccacccacttcaccacaggg
ctggatgctccaagagatttgagtgccactgaggtgcagtcagaagcagctgggataagc
tggaggcctccccgtgctccagtcactggatatctcctgatctatgaatccattgatggc
agagtcaaggaactcatcctaaaccccgagacaacgtcctacagcctgacagagctcagc
ccctccacccagtacacggtgaagctgcacgccctgagtggagccctgaggagcaaaacc
atccagaccattttcaccacaactgggctcctctatccctaccccaaggactgctcccag
gccctcctgaatggagaagccacctctgggctctacacaatttacctgaacggggacaag
gctcagcctctgcaagtgttctgtgacatgggcgaggacgggggaggatggatcgtgttc
ctgaggcgtcagaatggaaaacaagatttctacaagaactggaatacttatgtggcaggg
tttggagatcctaaggatgaattctggataggtctggagaacctgcacaaaatcacttct
cagggccagtacgagctgcgggtggatctgagggacaagggggacacggcctacgccgtg
tacgaccgcttcagtgtcggagacgccaagagccggtaccggctgcgggtggacggctac
agcggcacagcaggtgactccatgacctaccacaatggaaggtccttctccacctttgac
aaggaccatgactctgccatcaccaactgtgctctgtcgtacaaaggagctttctggtac
aagaactgtcaccgagtcaacctgatgggcagatatggtgacaacagccacagtcagggc
gtcaactggttccactggaagggccacgagtattccatccagtttgcagagatgaagctg
agaccctccagcttccggaacctggaagggcgccggaagcgagcgtag
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