KEGG   Aphelocoma coerulescens (scrub jay): 138120178
Entry
138120178         CDS       T10543                                 
Symbol
CPSF4L
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein isoform X1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
acoe  Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015  mRNA surveillance pathway
acoe05164  Influenza A
Brite
KEGG Orthology (KO) [BR:acoe00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    138120178 (CPSF4L)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    138120178 (CPSF4L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acoe03021]
    138120178 (CPSF4L)
   03019 Messenger RNA biogenesis [BR:acoe03019]
    138120178 (CPSF4L)
Transcription machinery [BR:acoe03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     138120178 (CPSF4L)
Messenger RNA biogenesis [BR:acoe03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     138120178 (CPSF4L)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_2 Torus zf-CCCH_3 zf-CCCH_4 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 138120178
NCBI-ProteinID: XP_068888755
LinkDB
Position
18:1307056..1309893
AA seq 233 aa
MMQELVAGVERIRFDSKADVEQQRGARPLPFPGVHSVQGHPRHGGAKPAVCKHWLRGLCK
KGDGCDFLHDYDAARMPECYFYSKFGECTSKDCPFLHAGATASTVGCPWYDRGFCRHGPL
CKYKHTRRVMCANYLVGFCPEGPKCKFVHLKAGLMASSTDPSKEAGCPWGLVQRDLAAAE
ERGGEDVPPKEPPPHVTQHLAAHLWDTSGCPPSPQSLLEGGTCFKRGSASPCR
NT seq 702 nt   +upstreamnt  +downstreamnt
atgatgcaggagctggtggctggtgtggagaggatcaggtttgactcgaaggctgacgtg
gagcagcagcgaggagctcggcccctgcccttcccgggggtgcacagcgtgcagggccac
ccccggcacggcggggccaagcccgcggtgtgcaagcattggctgcgagggctctgcaag
aagggcgacggctgcgacttcctgcacgactacgatgccgccaggatgcccgagtgctat
ttctactccaagttcggtgagtgcaccagcaaggactgtcccttcctgcacgccggtgcc
accgccagcaccgtgggctgtccctggtacgaccgtggcttctgcaggcacggtcccctg
tgcaagtacaagcacacgaggagggtgatgtgtgccaactacctggtgggcttctgcccg
gagggacccaagtgcaaattcgtgcacctcaaggccgggctgatggcgagcagcacagac
ccgtccaaggaagctggatgtccatgggggctggtacagcgggatctggctgctgcagag
gagaggggaggtgaggacgtgccacccaaggagccacctccacatgtcacccagcacctg
gcagctcatctgtgggacaccagtgggtgccccccgagcccacagagcctgctggaagga
ggcacctgcttcaagagaggatcagccagtccgtgccggtga

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