Aphelocoma coerulescens (scrub jay): 138120565
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Entry
138120565 CDS
T10543
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03030
DNA replication
acoe03420
Nucleotide excision repair
acoe03430
Mismatch repair
acoe03440
Homologous recombination
acoe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138120565 (RPA1)
03420 Nucleotide excision repair
138120565 (RPA1)
03430 Mismatch repair
138120565 (RPA1)
03440 Homologous recombination
138120565 (RPA1)
03460 Fanconi anemia pathway
138120565 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acoe03000
]
138120565 (RPA1)
03032 DNA replication proteins [BR:
acoe03032
]
138120565 (RPA1)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138120565 (RPA1)
Transcription factors [BR:
acoe03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
138120565 (RPA1)
DNA replication proteins [BR:
acoe03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
138120565 (RPA1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
138120565 (RPA1)
MMR (mismatch excision repair)
138120565 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
138120565 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
OB_MEIOB_N
DUF4939
Motif
Other DBs
NCBI-GeneID:
138120565
NCBI-ProteinID:
XP_068889449
LinkDB
All DBs
Position
19:6345139..6368109
Genome browser
AA seq
614 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEDVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSARCICQVNRFIVNSLKDGRRVVILMDVNVMQTADQVGGTIGNPQPYNEG
QGQQRSAAPAGNPAASKPQQQNGNLSGAGPAAPKYHAPSNQFGKASVPSALKTPGGSQAK
VVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQAD
KFFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFV
SISDLENTPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTVTLWGN
EAEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLE
CASISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPS
QDCNKKVIDQQNGLYRCEKCDREFPNFKYRLLLLVTIADCLEYQWVTCFQDSAEFILGQN
AAFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYS
KRLIANIRRNAQLG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgagggggccatcgcggccatcatgcagggggaggacgtctcc
aagcccgtgctgcaagtgatcaatacacgggctattgctacaggaactgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctttcctcattcatgttggcaacacag
ctgaactccctggtggaagaggaacgcttgtcagcccggtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
atgcaaactgctgatcaggttggtgggactattggcaatccccagccatacaatgaaggg
caagggcagcaacgttctgcagctccagcaggaaacccagcagccagcaaaccacagcaa
caaaatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaac
cagtttggaaaagcgagtgttcccagtgccctgaagacacccggggggtctcaggccaaa
gtggtgccaattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgtc
acccaaaaaggccagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttcc
atagagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagac
aagttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaag
actgctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgag
acttcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgta
tccatctctgacttggagaacacgcccaaagactcgattgttgatgtaattggaatttgt
aagagctacgaagatgtcactaaaattacagtgaaggctaacaatagggaggtttcaaag
aggaacgtgcatctgatggatacatcagggaagctggtgacagttacgctgtggggaaac
gaggctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtc
tctgactttggtggcagaagcctgtctgtcctctcctccagcacagttgtcatcaaccct
gatagcccagaggcttttaaactccgaggatggtttgactccgaggggcagcttctggaa
tgtgcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaattggaaa
actttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagc
tgtgtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctct
caggattgcaacaagaaagtgatagaccagcaaaatggactttaccgctgtgagaagtgt
gaccgcgaattccccaacttcaagtaccgcctgctgctcctggtgaccattgcagactgt
ctggaatatcagtgggtgacttgttttcaagattcagcagaattcattcttgggcaaaat
gcagctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaa
aatgcaaacttcaacacgtacgagttcaggatccgagtgaaactggagacttacaatgac
gaatctcgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagc
aagaggctgattgccaacatcaggagaaatgctcagctggggtga
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