Aphelocoma coerulescens (scrub jay): 138120724
Help
Entry
138120724 CDS
T10543
Symbol
CLTC
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04142
Lysosome
acoe04144
Endocytosis
acoe05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
138120724 (CLTC)
04142 Lysosome
138120724 (CLTC)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
138120724 (CLTC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoe04131
]
138120724 (CLTC)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acoe04147
]
138120724 (CLTC)
Membrane trafficking [BR:
acoe04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
138120724 (CLTC)
Exosome [BR:
acoe04147
]
Exosomal proteins
Proteins found in most exosomes
138120724 (CLTC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
TPR_1
Motif
Other DBs
NCBI-GeneID:
138120724
NCBI-ProteinID:
XP_068889725
LinkDB
All DBs
Position
19:8464495..8494371
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQSDFPVAMQISDKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAQHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANASGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVTFFT
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIIEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYASESKDIELAEELLQWFLQE
NKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKL
DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGY
SM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgcccatccgcttccaggagcatctccagctccaaaatctgggcatc
aacccagcaaacattgggttcagcactctgacaatggagtctgacaaattcatctgcatc
agagagaaagtaggagaacaggctcaagtggtgatcattgacatgaatgaccccagcaac
ccaatccgaagaccaatttcagctgacagtgctatcatgaaccctgccagtaaagtcatt
gcattaaaagctgggaaaacgctgcaaatctttaacattgaaatgaagagcaagatgaag
gctcacaccatgacagatgatgtcaccttctggaagtggatctctctgaacactgttgcc
cttgtgacggataatgcagtttaccactggagcatggagggggagtcccagcctgtgaag
atgtttgatcgccactccagccttgctggctgccagatcatcaactacaggactgatgcc
aagcagaaatggctcctgctgacaggaatatctgcacagcaaaaccgtgtagtgggagca
atgcagctgtactctgtggacagaaaagtgtcacagcccatcgagggacatgcagccagc
tttgcacagttcaagatggaagggaatgctgaagaatccactctcttctgttttgcagta
agagggcaagctgggggtaagctgcatatcattgaggttggcacaccacccactgggaat
cagccctttccaaagaaagctgtggatgtcttctttcctcctgaagcacaaagtgacttt
cctgttgctatgcagatcagtgacaagcacgatgtggtgttcctcataacaaagtatggc
tacatccacttgtatgacctggaaactggcacctgtatctacatgaacaggatcagtgga
gagaccatttttgttactgcacagcacgaagcaacagctggaattattggagtaaacaga
aagggacaagtgctctcagtgtgtgtggaagaggagaacatcattccctacatcacaaac
gtgctacagaatcctgacctggctttacggatggctgtccgcaacaacctggcgggggcc
gaggagctctttgccagaaaattcaatgcactctttgcacaagggaactactcagaggca
gcaaaagtggcagctaatgccccaaagggaatcctgcgtactccagacaccatacgccgg
ttccagagtgttccagctcagccagggcagacttcccctctcctgcagtattttggcatt
ctcctggaccaagggcagctgaacaagtatgagtcactggagctctgcagaccagtgctc
cagcagggccgcaagcagctcttggaaaaatggttaaaagaagataagctggagtgctcg
gaggagctgggagaccttgtgaaatctgtagatcccacgctagcacttagtgtctatctg
agagccaacgttccaaacaaggtcatccagtgttttgctgaaaccggacaagtccagaag
attgttttgtatgcaaagaaggttggatatactccagactggatttttttgctgaggaat
gtaatgagaatcagccctgatcaaggacagcagtttgcacaaatgctcgttcaagatgaa
gagcctcttgcagatataacacagattgtggatgtctttatggaatataatttaatccag
caatgtacagcctttctgctggatgcactgaagaataatcgtccctcagaaggtcccctg
caaacacgtttacttgagatgaacctcatgcacgcacctcaggttgcagatgccatcctg
ggaaaccaaatgtttactcactatgaccgggctcacatagctcagctgtgtgagaaggct
ggtttgctgcagagagcactcgagcacttcacagacctgtacgacatcaagcgtgcggta
gttcacactcacctcctcaatcctgagtggttagtgaattattttgggtccttatcagta
gaagactcactggagtgtctgcgtgcgatgttgtccgctaacatccgtcagaacctgcag
atctgtgtccaggtagcttccaaataccatgaacagctgtcaacacagtcactcattgag
ctctttgagtccttcaagagctttgaaggtttgttttacttcctcggctccattgtaaac
ttcagccaggatccagatgtgcacttcaagtacattcaagctgcatgcaagacaggacaa
attaaagaagtggaaagaatctgcagggaaagtaactgctatgatccagaacgtgttaaa
aacttcctcaaggaagctaaactcactgaccagctgcctctcatcattgtgtgcgaccgc
tttgactttgtccacgacttggtgctgtatttgtatagaaataatctccaaaaatatatt
gagatttatgtacagaaggtgaatccaagccgtctgccagttgttattgggggactgctt
gatgtggattgctctgaagatgtgataaagaacctcatccttgtagtgagaggtcaattt
tcgaccgatgaacttgttgcagaggttgagaaaagaaacaggctgaagctgcttctgccc
tggctggaagcaagaattcacgagggctgtgaggagcctgccactcacaatgcactggcc
aagatatacattgacagcaacaacaacccagagagattcctgcgggagaatccctactat
gacagtcgtgttgttggcaagtactgtgagaagagggaccctcacctggcctgtgtggct
tacgagcgtggacagtgcgatctggagcttattaatgtgtgcaatgagaactccctcttc
aagagcctctcccgctacttagttcgtcgtaaagaccccgagctctgggccagcgtgcta
ctggaaagcaacccctacagaagacccctgattgaccaggttgtccagactgcgctgtcg
gagacccaggaccccgaggaagtctctgtcactgtgaaggctttcatgactgcagatctt
cccaatgagctcattgaactgctggagaaaatagttctggataactccgtgttcagtgag
cacaggaatctgcagaaccttctcatccttacagctatcaaggctgaccgcacccgtgtc
atggagtacatcaatcgcctggataactacgatgcccctgatatagccaatattgctatc
agcaacgagcttttcgaggaggcatttgctatcttcaggaagtttgatgtcaatacatca
gctgtgcaggtgttgatagagcacattgggaacctggaccgtgcgtacgagttcgctgag
cgctgcaatgaacctgcagtgtggagccagctggccaaagcacagctccagaaggggatg
gtaaaggaagcgattgactcctacattaaagcagatgatccttcctcatacatggaagtt
gttcaagctgctaatgccagtggaaactgggaagaactggtaaagtatctccagatggca
cgcaagaaggcccgggagtcttatgtggagacagaattaatctttgctcttgctaaaaca
aaccgcctggcagagctcgaggagttcatcaatggacccaacaatgcacatatccagcag
gttggtgatcgctgttatgatgagaagatgtatgaagcagccaaactgttgtacaacaac
gtgtccaactttggccgtttggcctcaactttagtgcacctgggcgagtaccaggcagcc
gtggatggtgctcggaaagccaacagcactcgcacgtggaaagaggtttgcttcgcttgt
gtggatggaaaagaattccgcctggctcagatgtgtgggctccacattgtggtgcatgca
gatgagctggaagaactaatcaactattaccaggatcgtggctactttgaagagctgatc
actatgttggaagcagcgcttggactggagcgagcacacatggggatgttcacagagctg
gcaattctctactccaagttcaagccacagaagatgagggagcacttggagctgttctgg
tccagagtcaacattcctaaggttctgagagctgcagaacaagcccatctctgggctgag
ctggtgttcctatatgataagtatgaagaatacgataatgccataatcacaatgatgaat
cacccaacagatgcttggaaagaaggccagttcaaagatatcatcactaaggtggccaat
gtggagctgtactacaaggcaattcagttctatttggaatttaagcctctcttgctcaat
gatctgctgatggtgttgtcccctcggcttgaccacactcgtgctgtcaccttcttcaca
aaggttaaacagctgcccctggttaagccttacctgcgctctgttcaaaatcacaacaac
aaatcagtcaatgagtccctcaacaacctcttcattattgaagaagactaccaggctctt
aggacttctatagatgcttatgacaactttgacaacatttctcttgcccaacgtttggag
aagcacgagctaatagagttccgaagaatcgctgcctatctcttcaaaggcaacaaccgc
tggaaacagagtgtggagctctgtaagaaggacaggctgtacaaggatgcgatgcagtac
gcttctgaatccaaagatatcgagctggcagaagagctgctgcagtggttcctgcaggag
aacaagagggaatgctttggtgcttgtctcttcacctgctacgatctcctaaggccggat
gttgtcttggaaacagcgtggaggcacaacattatggactttgccatgccatactttatt
caggtcatgaaggaatacttgaccaaggttgatgcaataaaggaaaaggtggataaactg
gatgcatcagagtctttgagaaaggaagaggaacaagctacagaaacacaacctattgtt
tatggccagccccagctgatgttgacagcgggacccagtgtggcagttcctccgcaggca
cctttcggctacggctacacggcccctccgtacgggcagccacagcccggcttcggctac
agcatgtga
DBGET
integrated database retrieval system
