Aphelocoma coerulescens (scrub jay): 138120812
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Entry
138120812 CDS
T10543
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
Spliceosome [BR:
acoe03041
]
Common components
Common spliceosomal components
General mRNP proteins
138120812 (RBM39)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
Transformer
RRM_occluded
PRP38_assoc
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
138120812
NCBI-ProteinID:
XP_068889882
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All DBs
Position
20:complement(938381..967626)
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AA seq
650 aa
AA seq
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MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHDRKRSRSKERKRSRD
RERKKSRSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYVIQGHISLALTWPSRFWILAH
YFHLCHDMFKKWASSYLWWMLSLTISITAPLRSKKTFFRQIAWPNGFSERLLNVFSLPCL
SGCLHQFVATAERINCVQMESQSPVHSIQSVQQCLCAWWRYRKNVNSSGPKFNSAIRGKI
GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEF
FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEK
NRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG
YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLG
TTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVTDLQTRLSQQNEVLAAAASVQP
LATQCFQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSMTATQLLVPVRR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgatattgatattgaagcaatgcttgaagctccttacaagaaggatgagaac
aaattgagcagtgccaatggccacgaagaacgcagcaagaagagaaaaaagagcaagagc
cgaagtcgaagccatgatagaaagaggagcagaagtaaggaacgcaaacggagccgagat
cgggaacggaaaaagagcagaagccgggaaaggaaacggagcagaagcaaagaacgcaga
cgcagccggtctaggagtagagatcgcagattcagaggccgctatagaagtccctatgtt
atacagggccatatttcccttgctttaacctggccatcacggttttggatcttggcccac
tacttccacctgtgtcatgacatgtttaaaaaatgggcatcttcctacttgtggtggatg
ctgagtttaactataagcattactgctccattgaggagcaagaagacgtttttcagacaa
attgcctggccaaatggatttagtgaaagactacttaatgtcttcagcctgccatgtctt
tcagggtgtttacatcaatttgtagccacagcagaaagaatcaattgtgtacagatggaa
agccaaagcccagtgcacagcattcagtctgtgcagcagtgcctctgcgcttggtggaga
tacaggaagaatgttaacagttctggtccaaaattcaacagtgccatcagagggaagatt
ggtctgcctcacagcatcaaattaagcagacgtcgctccagaagcaaaagtcctttcaga
aaagacaaaagccctgttagagaacctattgataatcttacccctgaagagagggatgct
cgaacagtgttctgcatgcagttggctgcgagaattcgaccaagagacctggaagaattt
ttctctacagtagggaaggttcgtgatgtgcgaatgatttcagatagaaattccagacgt
tcaaagggaattgcttatgttgaatttgttgatgttagttcagtgcccctggcaatagga
ctgactggacagagagtcctgggtgtacctatcatagtacaggcatcacaggcagagaaa
aacagagcagcagcaatggcaaataatctgcagaagggcagcgctggtcctatgaggctc
tatgtgggatcattgcacttcaacataactgaagatatgcttcgaggaatcttcgagcca
tttggcaggattgaaagtattcagctcatgatggacagtgaaactggacgctcaaaagga
tatggattcatcacgttctcagactctgagtgtgccaaaaaggccctggaacaactcaat
ggatttgagctggctgggaggccgatgaaagttggacatgtaactgagcgtactgatgct
tccagtgctagctcatttttggacagtgatgagttggaacggactggaattgacttggga
acaactggtcgccttcagctgatggcaagacttgcagaaggtactggtttgcagattcct
ccagctgcacagcaggctctgcagatgagcggatctttggcctttggagctgtgacagat
ttacaaacgagactgtctcagcagaatgaagttctggctgcagctgcttctgtacaacca
cttgcaacacagtgcttccagctttctaacatgtttaatcctcaaactgaagaagaagct
ggctgggacacagaaattaaagatgatgtgattgaggaatgtaacaaacatggaggagtt
atccacatctacgttgacaaaaactcagctcagggcaatgtgtatgtcaaatgtccctcc
atcgctgctgccatcgcggctgtcaatgcattgcatgggaggtggttcgcaggtaaaatg
attacagcagcgtatgtacctcttccaacataccacagccttttcccagactctatgact
gcaacccaactactggttcctgttcgacgatga
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