Aphelocoma coerulescens (scrub jay): 138120879
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Entry
138120879 CDS
T10543
Symbol
SOX18
Name
(RefSeq) transcription factor SOX-18
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acoe03000
]
138120879 (SOX18)
Transcription factors [BR:
acoe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
138120879 (SOX18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox17_18_mid
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
138120879
NCBI-ProteinID:
XP_068890049
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All DBs
Position
20:complement(9279716..9283610)
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AA seq
417 aa
AA seq
DB search
MNISESNYCREEISQPRGDCSWVTAAVPAVEPGLAFPRPPGAASPASRTPSPEPGFAFGP
GSGGAAPGAAPSRTPSPEPGYGYSPPAGRPEGKAAEDSRIRRPMNAFMVWAKDERKRLAQ
QNPDLHNAVLSKMLGQSWKALSASDKRPFVEEAERLRIQHLQDHPNYKYRPRRKKQAKKI
KRMEPNILLHNLSQPCSDNFSMSHHGGSQPGHPQPPPLNHFRELHSMGSDIENYGLPTPE
MSPLDVLEQTEPAFFPPHMQDDCNMMPFRGYHHHHQMEFPQEKCMGRDVAVPYAQTPSHL
ADAMRTPHPSSLYYNQMCSGTQNGLSAHLGQLSPPPEAHHMESVDHLNQTELWTDVDRNE
FDQYLNMSRTRPEASGLPYHVSLSKVTPRSISCEESSLISALSDASSAVYYSPCITG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatctgagtctaactactgccgagaggagatatcgcaaccccggggcgactgt
tcatgggtcaccgccgccgtgccggccgttgagcccgggctcgccttcccgcgccccccg
ggagccgcctcccccgccagccgcacgcccagccccgagcccggcttcgccttcggcccc
ggctccggcggcgcggcccccggcgcggcccccagccgcacgcccagccccgagccgggc
tatggatacagccccccggccggccgccccgagggcaaggccgccgaggactcccgcatc
cgccggcccatgaacgccttcatggtctgggcgaaggatgagcgcaagcgactggcgcag
cagaaccccgacctgcacaacgccgtgctcagcaagatgctgggccaatcgtggaaagcg
ctgagcgccagcgacaagcgtcccttcgtggaagaggcagagcgactgcgaatccagcat
ctccaggatcaccccaactacaagtaccgcccaaggagaaagaagcaagccaagaaaatc
aagaggatggaacccaatatcctcctgcataacctttcccagccttgcagtgacaacttc
agcatgagtcaccatggcggcagccagccgggccacccccagcctcccccacttaaccac
ttcagagaactccactccatggggtcggatattgaaaactatggcttgccaactcctgag
atgtctcccttggatgtcttggaacagaccgagccggcgtttttccctccgcacatgcag
gatgactgcaacatgatgccctttcgcggctaccaccaccatcaccagatggagtttccc
caggagaagtgcatggggcgggacgtggccgtgccctacgcgcagaccccctcacacttg
gccgacgccatgaggactccccatccctccagcctttactacaaccagatgtgctcggga
actcagaacgggctttccgcccacctgggccagctgtcgcccccgcctgaagcccaccac
atggagagcgtggatcacttgaaccaaaccgagctctggacagacgttgaccgcaacgag
tttgaccagtatttgaacatgagcaggactcgtcccgaagcctcgggcctcccttaccat
gtctccctgtccaaagtgactcctagaagcatctcctgcgaggagagcagtttgatatcc
gccctgtccgatgccagcagtgctgtttactatagcccctgcatcaccggttag
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