Aphelocoma coerulescens (scrub jay): 138120899
Help
Entry
138120899 CDS
T10543
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138120899 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138120899 (CSTF1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
138120899 (CSTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
CSTF1_dimer
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
VPS8_N
PROPPIN
Ge1_WD40
Beta-prop_WDR11_1st
Beta-prop_HPS5
Frtz
Beta-prop_WDR75_2nd
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
138120899
NCBI-ProteinID:
XP_068890098
LinkDB
All DBs
Position
20:complement(13583777..13592585)
Genome browser
AA seq
534 aa
AA seq
DB search
MSGRRVAAACDRRQLPRGMGSMAAPLLDPRPLRLPFLEADSRLPSMCGRSMQQPSRRSVL
RARPPPPLPPPPLDALRAPAAILGAERGRQKEGSAPPRQSLLTMYRTKVSLKDRQQLYKL
IISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGRSDTVAP
GTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDT
ERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTL
KLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNP
QDQHTDAICSVSYNASANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKN
SKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTIS
LCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtcgccgtgtcgctgcagcgtgtgacagacgacagctgccccggggcatgggg
agcatggcagccccgctgctcgacccgcgcccgctccggctgccctttctcgaggctgac
agccgcctcccatcgatgtgcgggcgctcgatgcagcagccttcgcggaggagcgtcctg
cgggcccggccgcccccgccgctgccgccgccgccgctcgatgcgctccgcgctcccgcc
gccatcttaggggcagagcgcgggcggcagaaggaaggctcggcccccccaaggcagtcc
ctgctcacaatgtataggacaaaagtcagtttgaaagaccgtcagcaactttacaaactg
ataattagtcagctgctctatgatggatacatcaacattgccaatggcttgataaatgag
atcaaaccacagtctgtctgtgcaccctctgaacaactgctgcacctaattaagttaggc
atggagaacgatgacagcgctgtccagtacgccatcggccgctcggacaccgtggcaccg
ggcaccggcatcgacctggagttcgacgccgacgtgcagaccatgtcccccgaggcgtcc
gagtacgagacctgctacgtgacatcccacaaagggccctgccgggtggccacctacagc
agggatggacagttaatagccacagggtcagcggatgcctccatcaaaatcctggacacc
gagaggatgctggccaagagtgccatgcccattgaggtcatgatgaatgagacagcccag
cagaacatggaaaaccacccggtgatccggactctgtacgatcacgtggatgaagtgacg
tgtttggctttccatccaacagaacagatcctggcatctgggtcgagggactacacactt
aaattgtttgattattcaaaaccttctgctaaaagagccttcaaatatatccaggaagca
gagatgttacgctccatttctttccacccttctggggatttcatcctggtggggacccag
cacccaacattacgcctgtatgacatcaacaccttccagtgcttcgtgtcctgcaacccc
caggaccagcacacggacgccatctgctccgtcagctacaacgccagcgccaacatgtac
gtgacgggcagcaaggacggctgcatcaaactctgggatggggtctccaaccgctgcatc
accacctttgagaaggcacacgatggagctgaagtctgctctgccattttttccaaaaat
tccaagtatatcttgtccagtgggaaagactctgtagctaagctctgggagatatccact
ggtcggacgctggtgaagtacacaggtgctggcttgagtggccgccaagtacacaggact
caggctgtgttcaaccacacagaagattacgtgctgctcccagatgaaaggaccataagt
ctgtgctgctgggattccagaactgccgagcgcaggaacctcctgtccctggggcacaac
agcatcgtgcgctgcatcgtgcactcgcccaccaaccccggcttcatgacctgcagtgac
gactacagggccaggttctggtacaggaggtccacgacagactga
DBGET
integrated database retrieval system
