Aphelocoma coerulescens (scrub jay): 138121001
Help
Entry
138121001 CDS
T10543
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138121001 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoe03041
]
138121001 (PRPF6)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138121001 (PRPF6)
Complex C
U5 SnRNP specific factors
138121001 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
FAT
TPR_CcmH_CycH
TPR_1
T7SS_EccA1_N
ARM_TT21_C
ARM_TT21_5th
TPR_21
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
138121001
NCBI-ProteinID:
XP_068890255
LinkDB
All DBs
Position
20:9224488..9249114
Genome browser
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQTADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQSGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALKHYEDFPKLWMMKGQIEE
QKELVEKAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPDLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCDVSKDIENWQKKIGEILVLVAAKLKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaaaagaagccgttcttgggcatgcccgcgcccctgggctacgtgccgggg
ctgggccgcggagccacaggtttcaccacccgctctgatattggccctgcccgcgatgcc
aacgaccccgtggatgaccggcatgccccgccggggaagagaactgtgggggaccagatg
aagaagaaccagacagcagatgatgatgatgaggacttgaatgacaccaactacgatgag
ttcaatggctatgctgggagcctgttctccagcggcccctatgaaaaagatgatgaggaa
gcagatgctatttatgcagctttggataagaggatggatgaacgcaggaaagaaaggagg
gaacaacgagaaaaggaggaaatagaaaaataccgtatggaacgacccaaaattcagcag
cagttctcagacttgaaacggaaattagcggaggttactgaggaggagtggctgagtatt
cccgaggttggggatgccaggaacaagcggcagaggaatcctcggtacgagaagctgact
cccgtccccgacagcttctttgcaaagcatttgcagtcaggggagaatcacacttctgtg
gacccacgccagacacaatttggtggactgaatactccatatccagggggtttgaatact
ccatacccaggaggaatgacaccaggcttgatgacacctgggacaggtgaattggatatg
aggaagattggccaagccaggaacactttgatggatatgaggctaagccaggtgtcagac
tccgtgagcggccagaccgtagtggacccgaaaggatatttgacagacttgaattccatg
attccaacacatggaggagatatcaatgatatcaaaaaagcccgtttgctcctgaaatct
gtccgagagaccaatcctcatcatccaccagcctggatagcatcagcccgactggaggag
gtcactggcaaactccaggtggctcgaaacctcatcatgaaaggaacagagatgtgccct
aagagtgaagatgtttggttggaagctgctcggcttcagcctggagatacagccaaggct
gttgtggcccaggctgtccggcaccttccacagtctgtgcggatctatatcagagcagca
gagctggagacagacatccgtgccaagaaacgtgtccttaggaaagcccttgagcatgtt
ccaaactcagtgcgtttgtggaaagcagccgtggagctggaggaacctgaggatgccagg
atcatgctgagccgggctgtggagtgctgtccaaccagtgttgaactgtggctggcgctg
gcaaggctggagacatatgagaacgctcgtaaagtccttaacaaagcccgggagaatatc
ccgacggatcgtcacatctggattactgctgccaaactggaggaagccaatggaaacacc
cagatggtggagaaaatcattgacagagccatcacatctcttagggctaacggtgtggaa
atcaacagggagcagtggatacaggatgctgaggaatgtgataaagctggaagtgtggcc
acatgccaggcaatcatgagagctgtgattgggattgggatcgaggaagaagatcggaaa
cacacctggatggaagatgcagacagttgtgttgctcataatgccctggagtgtgcccga
gccatttatgcctatgccttgcaagtcttcccgagcaagaagagtgtgtggctacgagca
gcctactttgaaaagaaccatggaaccagagaatccttggaggctcttttgcagagggct
gttgctcactgtcccaaagcagaagtgctgtggctcatgggagccaaatccaagtggctg
gcaggagatgtgccagcagccagaagcatcttggccctggctttccaggccaaccccaac
agcgaggagatctggctggctgccgtgaagctcgagtcggagaacaatgagtatgaaaga
gcgaggaggctgctggcaaaggctcgcagcagtgcccccacagcaagggtcttcatgaag
tctgtgaagttggaatgggtgcttgggaacattgctgcagcccaggagctctgtgaggaa
gccctgaagcactatgaggacttccccaaactgtggatgatgaaaggacaaattgaggaa
caaaaagagctggtagagaaagcacgggaggcttataatcaagggttgaagaagtgcccc
cattccatacccctgtggcttttgctgtccaggctggaggagaaagtcgggcagctgact
agagcaagagccatcttggaaaagtctcgcctgaagaatccaaagaatccagatctctgg
ttggagtctgtgaggttggaataccgagctgggctgaagaacattgcaaacacactgatg
gccaaggcactgcaagagtgccccaattcaggaatcctgtggtcagaagcaattttcctt
gaagcgcgaccgcaacgaaagaccaagagtgtggatgctctcaagaagtgtgaacatgac
ccacatgtcctgctggctgtggccaagctgttctggagcgagcgtaaaataaccaaggcc
agagagtggttccaccggacggtgaagatagactctgacctgggggatgcctgggccttc
ttttacaaatttgagctccagcatggcacagaggaacaacaagaagaggtgaggaagcgc
tgtgagaatgccgaacctcgccatggagagctctggtgtgatgtctccaaggacatagag
aattggcagaagaagattggggagattcttgtgcttgtggcagccaagctgaaaaatacc
ttctag
DBGET
integrated database retrieval system
