Aphelocoma coerulescens (scrub jay): 138121222
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Entry
138121222 CDS
T10543
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
acoe03036
]
138121222 (CHD6)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138121222 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Chromo
Helicase_C
BRK
ResIII
HTH_Hrp3
DEAD
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
138121222
NCBI-ProteinID:
XP_068890596
LinkDB
All DBs
Position
20:1300650..1392692
Genome browser
AA seq
2765 aa
AA seq
DB search
MIMKIQKKEKQPPSLKALSLSSMSSAWECKTQDTFASSEEQDKVPHQVTVTATNTGGQCQ
CPKEEPNGAPQKRTSTQNGMQDSGGTGVKKKRKKKDLAEQEGGDKAAVEVKPKRRREPKE
PKEPKKVKESKKPKEPKQREVAKKPRKPREPKAPKEAKDKKSGSEPAPRSRPKKNSKDTP
VEKKKKGKRKNEIPVNSLDLDQDLLSPSVQSPEESAELADSQKRRSGRQVKRRKYNEDLD
FKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILASRMVQKEAHPGGL
AFETEEFYVKYRNFSYLHCKWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFN
PDYVEVDRILEVAHTKDPDTGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFEALQI
PPEIKHMVTYPEERPASESWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISR
QMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNR
NCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEE
QVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGA
NQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHCPEAPDFQLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC
KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMD
EEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKW
AKIAELDTDAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFN
EKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYK
GDEKIKSFIWDLITPTKDGQNQALQNHSGLSAPVPRGRKGKKTKSQMLLPEIKNADWLAT
CNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAADKAFEGTPARELDVLLPD
IDYVEIPVDWWNAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSAEQGV
SDGAQDAAERGSMEKEESSGEKLEGLSKQEDIVAAGVGEASEKRDEPAAAQDGSDSDRSC
WPVSSALTARLRRLVTVYQRCNRKELPPRAEMLVPGNHGYWLQDEMFRRASEMDSVNKEM
QKRWTRREQADFYRTVSSFGVIYDQEKKVFDWAQFRAISRLEKKTDESLEKYFYSFVAMC
KNVCGLPLWKEDGPPDPDIYVEPITEERAARTLYRIELLRKVREQVLKCPQLHERLKLCR
PSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMNDPQLSFLDAYRNYAQHKRTGLPGP
ETLCCLYQSNSKLYSSPLYSQMDQTCETLENEAESQIKLETVGSTMSQAGGSPADANCET
FMSEVRDIISSTYDESSLPDSLVCMMYDEKACPSEQSSLARDSPNCTDVGSSVAKLSEGK
LEGDEDPSSCDADAMREAPFLEGLQVCSDRMDSQNEEAEPSPSTPGSNPSQSAAAKLGKG
LEQKGALASPAAGLPEHGTMERVLSVGLYSPSLHNYELKVPPEQRFISLLQEKGMEAKSG
PSQSHSEEDEEEEEDDDNSETAADTVEGLNGPRIRADCGPEAHELGGEEQSSGLPTPEGT
CPEDVNGERESLGLGEPSAEGREDCGSSEESTRQHSPGQAQSQLFSLPTPLPQGGPQGTE
PPCVRGEPLRRAAEGQTGCTEAPHPEPQGIKQEKCDNRDDGEKASSNQSQDGAEKYLEEE
NKNSASVLPGEIDDLQDARAPTIAQLLQEKTLYSFSEWPKDRVIINRIDNICHAILKGKW
PSSSQQFEAQSLVTAPAMASSAGSRSSFAESEAPDPSFNNGVLMSRVQKEGFLSPAFAKD
ERKHRRPYEFEMERDAKQRSLEQLAAAHVHPPIVLNGWREAAVDLSRASDGSPGNSSPFP
LNTNMPKLGTVNALQSSLGMDLSGILQAGLIHPVTGQIVNGSLRRDDAAMRRRRGRRKNV
EGMDLIFLKERPLPNRLQDVQEDQPQPPQNSPLPDGPVAATSTPQPVPAAGSQEKAVPNK
SLLDWLRQQSDYTLDVPSFGTVAVPEGSDPRETWCSISVLGTAERGRKHSTAELNFSDKP
KQRRQRCKDPNKLDISSLTGEERVPVVHKGTGRRLGGATAPALKELPRWLDANLEYAVAA
DWADIVKLSGYLPENKFNRILTEPVLRDSGPRRRGRRPRSELLKGPGVVADSSSGMGPLF
MNGLIAGMDLVGLQNMRNMQGIPLTGLVGFPAGFAAVPAGEDVKSTLSMLPMMLPGMATV
PQMFGVGGLLNSPMTTTCTATAPTSLTSTTKGGTASAEKANEEKQGSQDGKKEPLAEDKP
GPSSFSNQTESAITTSSPVAFNPFLIPGMSPGLIYPSMFLSPGIGMALPGIQQTRHSEAA
NLESQKRKRKKAKGESANPEPETVSLPEKEAANSQNCVEQSPPAAAEKEQDGPAEEEHQA
AHNTD
NT seq
8298 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaaaaaagaaaagcagccgccaagcttaaaagcactgagcctc
tcctcaatgtcgtctgcctgggagtgcaagacacaggacacctttgccagcagtgaagag
caggacaaggtgccccaccaggtgacagtgacagccacaaacacaggtggccagtgccag
tgcccgaaggaggagcccaacggggctccccagaagcggacaagcacccagaatgggatg
caggacagtgggggcacgggggtgaagaagaaacggaagaaaaaggatctggcagagcag
gaagggggagataaagcagctgtggaggtgaaaccaaagaggaggagagagcctaaagaa
ccaaaagagcctaaaaaggtgaaggagtccaagaagccgaaggagcccaagcagagggag
gtggctaagaagccccggaaacctcgggaacccaaagccccaaaggaggctaaagacaag
aagagtggctctgagccagcccccagatcaagacccaagaagaacagcaaagacaccccc
gtggagaagaagaagaaagggaagaggaaaaatgagataccagtgaacagtttggatttg
gatcaggatctcctgagcccatctgtacagagcccagaggagtctgcggagttagctgac
agccagaaacgacgctctggacggcaggtgaagaggaggaagtacaacgaggacctggat
ttcaaggttgtggatgatgacggcgagacaattgccgtgctgggagctgggcgaacctct
gcgctctccgcctctactctggcgtggcaggcagaggagcctcccgaggatgatgccaat
atcattgagaagatccttgcctccaggatggtgcagaaggaggctcatcctggaggcctg
gcatttgagacagaggagttctacgtcaagtacaggaacttctcttacctccactgtaaa
tgggcaacgctggaggagctggagaaggaccccaggatctcgcagaagataaagcgcttc
cggaacaagcaggctcagatgaaacatatttttacagagcctgatgaagatttgttcaac
ccagactatgtggaggtagatcgaattctggaggtggctcacacaaaggaccctgacact
ggggaggaggtgactcactacctggtgaagtggtgctcactgccctatgaggagagcacc
tgggagctggaggaggatgttgacccagggaagattaaagagtttgaagccctccaaatc
cctccagaaatcaagcacatggtaacgtaccctgaggagcgcccagcatccgagtcctgg
cagaaactggagaagtcccgggagtacaagaacagcaaccagctgcgggagtatcagctg
gagggaatgaactggctgctctttaactggtataacaggaagaactgcatcctggctgac
gagatggggttggggaagacaatccagtcaatcaccttcctctcagagatattcctgatg
ggcatccatggccccttcctcatcatcgcacctctctccaccatcacaaactgggagagg
gagttccgcacctggacggagatgaacgccatcgtgtaccacggcagccagatcagccgg
cagatgatccagcagtacgagatggtgtacagggacacacagggtaaccctctccctggg
atcttcaagttccaggtggttatcaccacctttgagatgatccttgctgactgcccggag
ctgaagaagatccagtggcgctgtgtggtcattgacgaggcacatcgcctgaagaacagg
aactgcaagctcttggaggggctgaagctcatggccctggaacacaaggtgctgctgaca
gggacccctctgcagaactcagtggaggagctcttcagcctcctaaattttctggagcca
cagcagttcccctcagagacagctttcctggaagagtttggagacctgaagacagaggag
caggtgaagaagctgcagtccatcctgaagcccatgatgctgcgacggctgaaggacgat
gtagagaagaatctggcacccaaacaggagaccatcattgaggtggagctgaccaatatc
caaaagaaatactaccgggccatcctggagaagaatttctccttcctctccaagggtgcc
aaccagcacaatatgcccaacctcatcaataccatgatggagctgcgcaagtgctgcaat
cacccgtacctcatcaatggggcagaggagaagatcctggaagacttccgtaaaacacac
tgcccagaggcaccagacttccagctgcaggcgatgatccaggcagctgggaagctggtg
ctcattgataagctgcttcccaagctgatcgctggtgggcacaaggtgctcatcttctca
cagatggtgcgctgccttgacatcctggaagactatctcatccagagacggtacacctat
gagcgcattgatgggcgggtgcgtggcaacctgcgccaggctgccatcgaccgcttctgc
aagcccgactcggatcgctttgtgtttctcctgtgcacgcgggcgggcgggctgggcatc
aacctgaccgctgctgacacctgcatcatcttcgattccgactggaacccacagaatgac
ctgcaggctcaagctcgttgccaccggatcgggcaaagcaaggcagtgaaggtctatcgc
ctcatcaccaggaactcctacgagcgggagatgttcgacaaggccagcctgaagctgggc
ctggataaagctgtgctgcaggacataaaccgcaagggcagcaccaatggggttcagcag
ctctccaagatggaggtggaggacctgctgcggaagggcgcctacggcgcgctcatggat
gaggaggacgaggggtcgaagttctgtgaggaagacattgatcagatcctccagcgcagg
acacagaccatcacgatccagtctgaagggaagggctccacatttgcaaaggccagcttc
gtagcatcaggaaacagaactgacatttccttagatgaccccaacttctggcagaagtgg
gccaagatagcagagctcgatacagatgccaagaacgaaaaggagagcctggtcattgac
agaccccgagtgcggaagcaaaccaaacactacaattccttcgaagaggatgagctgatg
gagttctctgagctggacagtgactcggacgagcgacccacacgctcacggcgattcaac
gagaaaacgcggcggtacctgcgggctgagtgcttccgtgtggagaagaacctgctcata
tttggctggggacgctggaaagatatcctgacccatgggcggttcaagtggcacctgaat
gaaaaggacatggagatgatttgtcgggccttgctggtgtattgcgtcaaacactacaag
ggggatgagaagattaagagttttatctgggatctcatcacgccaacgaaggacggccag
aaccaggctctgcagaatcactcaggcttgtcagcacccgtgcccagaggcaggaagggg
aagaagacaaagagccaaatgctgcttcctgagataaagaatgccgactggctcgccacc
tgcaaccccgaggtggtgctccatgatgacagctacaagaagcacctcaaacagcactgc
aacaaggttctgctgcgggtgcgaatgctctactacctgaaggctgaagtgctgggggag
gctgcggataaagcctttgaggggacccccgccagggagctggatgtgctgctgccagac
attgactacgtagagatcccagtggactggtggaatgccgaagccgataaatccctgctc
atcggtgtcttcaagcacggttacgagcggtacaacgccatgcgggcggacccagcgctg
tgtttcctggagaaggtgggcatgcccgatgagaagctgctctctgctgagcagggcgtc
agcgacggggcacaggatgctgccgaaaggggcagcatggaaaaagaagagagcagtgga
gaaaagctggaggggctgtcaaaacaggaggacatcgtggctgctggggtgggtgaagcc
agtgagaagcgggacgagccagcggcagcccaggatggctccgactcagacagatcctgc
tggcctgtctcctctgctctcacggccagactgcggcgactcgtcaccgtctaccagcgc
tgcaaccgcaaggagctgcctccccgtgctgagatgctggtgcctggtaaccatggctac
tggctgcaggatgagatgttccggagagcctctgagatggactcggtgaacaaagaaatg
cagaaaaggtggaccaggagggagcaggcagatttctaccgcactgtctcctcctttggg
gttatctatgaccaagagaaaaaggtctttgactgggcccagttccgagccatctctcga
ctggagaagaagacggatgagagcctggagaagtacttctacagctttgtggccatgtgc
aagaatgtctgtggtctccctctgtggaaagaggatggtcctccagaccctgacatctac
gtggagcccatcacggaggagcgtgctgccaggaccctgtaccgcatcgagctgctgcgg
aaggtgcgcgagcaggtgctcaagtgcccccagctccacgagcgcctcaagctgtgccgg
cccagcctctacctgcccgtgtggtgggagtgtggcaaacacgaccgggacctgctgatc
ggcaccgccaagcacggcctgaaccgcactgactactacatcatgaatgacccccagctg
tcttttttagatgcatacagaaactatgcccagcataaaagaacggggctcccaggccca
gaaaccctgtgctgcctttaccagtctaactccaaactctacagttcccccctgtacagc
cagatggaccagacctgtgaaaccctggagaatgaagctgagagtcagatcaagctagaa
accgtgggcagcaccatgtcccaggctgggggcagcccagcggatgcaaactgtgaaaca
ttcatgtccgaagtccgggacatcatttccagtacctacgatgagagctcgctgccagac
tcattggtgtgcatgatgtacgatgagaaggcctgtcccagcgagcagagctccctcgcc
agggacagcccgaactgcacagatgttggaagcagcgttgccaaactctccgagggcaag
ctggagggggatgaggatccatccagctgcgatgcagatgccatgagagaggctcccttc
ctagagggtttgcaggtgtgctctgaccgaatggacagtcagaatgaggaagctgagcct
tcaccttctacccctgggagcaacccttcacagagtgctgcagccaagctcggtaaaggc
ttggaacagaaaggagcacttgccagcccggcagcagggctgcctgagcacggcaccatg
gaaagggtcctaagtgtggggctctacagtcccagtctccataactatgaactaaaggtt
cctcctgagcagaggttcatcagtctgctgcaggagaaaggaatggaggcaaagtcaggg
ccaagtcagagccacagcgaggaagatgaagaggaagaagaggatgatgataactctgaa
acagcagcagatacggtggaaggcttgaatggtcccaggatcagggctgattgtggccct
gaggctcatgaactggggggtgaggagcagagctcaggtctccccacacccgagggcact
tgcccagaagacgtgaatggcgagagggagtccctggggctgggggagcccagcgcagag
ggcagggaggactgtggctcgagtgaggagagcacccgtcagcactcaccgggccaggct
cagagccagctcttcagcttgcccacacctctgcctcagggggggcctcaggggacagaa
cccccctgtgtcaggggggaacccttgcgccgagccgctgaggggcagacaggctgcaca
gaggccccgcaccccgagcctcagggcataaagcaagaaaagtgtgacaacagagatgat
ggggagaaagccagcagcaaccagagccaagatggtgcagagaagtacttggaggaagag
aacaagaattctgcttctgtcctgcccggggagattgatgatcttcaggatgcccgggca
ccaaccattgcccagctgctgcaggagaagacgctttactccttctctgagtggcctaag
gaccgtgtgatcatcaaccgcattgacaacatctgccatgccatcctgaagggcaagtgg
ccttcttccagccagcagtttgaggcacagagcctggtgacagccccagccatggccagc
agcgctggcagcaggagcagctttgccgagtcagaagcccccgatcccagcttcaataac
ggggtgttaatgtcacgggtacaaaaggaaggtttcctgagccctgcctttgcaaaagac
gagcggaagcacaggagaccctatgaattcgagatggagagagatgccaaacagaggagc
ctggagcagctggcagcagcccatgtccatccacccattgtgctgaatggctggcgagag
gcagcggtggatttgtccagagcctctgatgggtccccggggaactcctctcctttcccc
ctgaacacaaacatgcccaaattggggaccgtgaatgccctccagagctccctgggcatg
gacttgtctggcatcctacaggcagggttaatccatcctgtcactggacagattgtaaac
ggcagcctccgaagagacgatgctgccatgagaaggagacggggcaggaggaaaaatgtt
gaagggatggacctcatcttcttgaaggagaggcctcttccaaacaggctgcaggatgtt
caggaagaccagccacaaccccctcagaacagtcctctccctgacgggccggttgctgct
acctcaactccacagccagtcccagctgcaggcagccaagagaaggctgtcccgaataag
agtctcctcgactggctccggcagcagtctgactacacactcgatgttcccagctttggc
acagttgcagttccggagggctctgatcccagagaaacatggtgcagcatctctgtgctg
ggaacagctgaaagaggaaggaaacacagcacagctgagctgaatttttcagacaagccc
aagcagaggaggcagcgctgcaaggaccccaacaaactggacattagctctctgactgga
gaggagcgggtgccggtggtacataagggtaccggacggcggttagggggagccacggca
ccagcattgaaggaattgccaaggtggcttgatgcaaacttggagtatgctgttgcagct
gactgggctgacattgttaagctttcaggctacttacctgaaaacaaattcaatcgcatc
ctcaccgagcccgtgctccgggactctgggccgcgccggagagggaggaggccccggagc
gaactccttaaaggccctggcgttgtagcagattcttcttctggaatgggaccattgttc
atgaacggactaattgctgggatggatctggtgggacttcagaacatgagaaacatgcaa
gggatccctctgaccgggctggtcgggtttcctgccggctttgcagcagtgcccgctggt
gaggatgtgaagagcaccctgagcatgttgcccatgatgctgccgggcatggcaaccgtc
ccccagatgttcggtgttggaggactcctcaactcccccatgacgacgacttgtaccgcg
actgctccgacttcgttaacaagcacaacgaaaggtggcacagccagcgccgagaaagcc
aacgaggagaaacagggcagccaggatgggaaaaaagaacctctcgctgaagacaagcct
ggtcctagttcattttctaatcagacagaatctgcaataactaccagtagtcctgtagct
tttaacccatttcttatcccagggatgtctcctggactgatctatccctccatgttcctt
tcccctggcatcggcatggcgctgcctggcatccagcaaaccaggcactcggaggcggca
aacctggagagccagaagcggaagaggaagaaagcaaaaggggaatcggcaaatccagag
ccagaaactgtctcactgccggaaaaagaagctgcaaacagtcaaaactgtgtggagcag
agcccgccagcggcagcagagaaggagcaggacggaccagcagaggaggagcaccaagca
gctcacaataccgattag
DBGET
integrated database retrieval system
