Aphelocoma coerulescens (scrub jay): 138121450
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Entry
138121450 CDS
T10543
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
acoe04515
]
138121450 (CLSTN1)
Cell adhesion molecules [BR:
acoe04515
]
Cadherins
Cadherin related
138121450 (CLSTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
Glyco_hydro_16
Toxin_R_bind_N
EphA2_TM
V_ATPase_I
SID-1_RNA_chan
PFF1_TM
Zip
Cadherin_C_2
Neur_chan_memb
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
138121450
NCBI-ProteinID:
XP_068891078
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All DBs
Position
21:complement(8448622..8481125)
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AA seq
970 aa
AA seq
DB search
MPAPAARLLLAALLCGAAAAARVNKHKPWIETTYHGIVTENDNTVLLDPPLIALDKDAPL
RFAESFEVTVTKEGEICGFKIHGQNVPFEAVVVDKSTGEGIIRSKEKFDCELQKDYTFTI
QAYDCGKGPDGANAKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNILKVEAV
DADCSPQFSQICSYEIVTPDVPFAIDKDGYIKNTEKLSYGKEHQYKLTVTAYDCGKKRAA
EDVLVKISIKPTCKPGWQGWSKRIEYEPGTGSLPLFPGMHLETCDEPITSVEATVELETS
HIGKGCDRDTYSEKSIHRLCGAASGTAELLPPPSSAANWTVGLPTDNGHDSDQVFEFNGT
QAVKIPDGVVTVSLKEPFMISVWMRHGPGTKEKETILCNSDKTDMNRHHYTLYVHNCRLV
FLFRQDPSEGKTYKPAEFHWKLNQVCDKEWHHYVVNVEFPAVTLYVDGVSYDPFPVTEDY
PLHPSKIETQLVVGACWQEYTGNENDNETVPETSAGGELRMAQFFRGNLAGLMIRSGKLE
NKKVIDCLYTCKEGLDLQMADGVGKGVKIHMNPSQSTLTIEGDDIDRVDKAMQHISYLNS
RQFPTPGIRRLKITSVVRCFNEEACVSIPSVEGYVMVLQPEEPKISLSGINHFARSASEF
ESSEGVSLFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDTCEVTVLGEELN
QEQESLEIDMTRLQQKGIEMSSSNLGMIITGVDTMANYEEVLHLIRYRNWHTVSLFDRKF
KLVCSELNGRYVSNEFKVEVNVIHTASPVEHANHIAAQPQFIHPVHHSFVDLSGHNLANP
HPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTI
TVNPMETYEDQHSSEEEEEEEEEESEDGEEDDITSAESESSEEEEGEQEEDQQNVNRQQQ
LEWDDSTLSY
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccccgccgctcgcctgctgctcgccgcgctgctctgtggagcggcggcggcc
gctcgagttaacaagcataagccatggattgaaacaacctatcatggcatagttacagaa
aatgacaacacggtgctcttggacccccctttaatagccctggacaaagatgcacctctg
cgttttgcagagagttttgaggtgacagtcaccaaagaaggtgagatttgtggatttaaa
atccacgggcaaaatgttccctttgaagcagttgtagtggataaatccactggtgagggg
ataatacgctctaaggaaaagtttgactgcgagctgcagaaggactacacattcaccatc
caggcctacgactgtgggaagggaccagatggagcaaatgcaaaaaaatcccacaaggcc
acagtccatatccaggtgaacgacgtgaacgagtatgccccagtgttcaaggagaagtcc
tacaaggccacggtcatcgagggcaagaggtacgacaacatcctcaaggtggaagccgtg
gatgcagattgctccccccagttcagccagatctgcagctacgagatcgtgactccggat
gtgccctttgccattgacaaggatggttatataaaaaacacagaaaagttaagctacggt
aaagaacatcagtataaactgacagtaacagcctatgactgtgggaagaagagagctgct
gaggatgtgttggttaaaattagcattaagcctacgtgcaagcctggctggcaaggttgg
agcaaaagaatagaatatgagcctggcactggttctttgcctctgttccctgggatgcat
ttggagacatgtgatgaaccaataacctcagttgaagcaacggtggaactagaaaccagc
catattggtaaaggctgtgatagagacacctactctgagaaatccatccacaggctctgt
ggtgctgcttctggcacagctgagctgctcccccctccaagcagtgctgctaactggact
gtggggctgccgacagataatggccatgacagcgaccaagtctttgagtttaatggcaca
caggctgtgaagattccagatggtgttgtcacagtcagtctgaaagagcccttcatgatt
tcagtatggatgaggcatgggcccggaaccaaagagaaagagacaattctgtgcaattca
gacaagacagatatgaaccggcaccactacaccctctatgtgcacaactgccgcctggtc
ttcctcttccgccaggatccttctgagggaaaaacctacaaacctgctgaattccactgg
aaactaaatcaggtgtgtgacaaggagtggcaccactacgtcgtcaacgttgaatttcct
gcggtgactctttatgtggatggtgtttcctatgatcctttcccagtcactgaggattac
ccactccacccttccaagatagaaacacagctggtggttggagcatgttggcaagaatat
acaggaaatgaaaatgacaatgaaactgtgcctgagacctctgcaggtggtgaactgcgc
atggctcagtttttccgaggcaatctggcagggttgatgattcgttctggtaaactggag
aacaagaaggtgattgattgcctctacacctgcaaagaggggctggatttgcagatggct
gatggtgttggcaaaggtgtgaagatccacatgaacccgagccagtcaacactgaccata
gaaggggatgacattgacagagttgacaaggccatgcagcacatttcctacctgaactcc
cgccagttcccaacacccggcattcggaggctgaagatcaccagcgttgtcaggtgtttc
aatgaagaggcctgtgtctccattccctctgtggaggggtatgtcatggtcttgcagcca
gaggaaccaaaaatcagcctgagtggcatcaaccactttgcccgctctgcctcagagttt
gagagctccgagggcgtttccctcttccctgagcttcgcataatcagcaccattacccgg
gaggtggagccggagggagatggggatgaagatcctacagtccaagagtctttggtatct
gaagagatcatgcacaacctggatacgtgtgaggtgacagtgctgggagaggaactaaat
caggaacaagagagcctggagattgacatgacacgattgcagcagaaaggcattgagatg
agcagttccaacctgggcatgataatcacaggggttgacaccatggctaactacgaggaa
gttctgcacctgatccgctacaggaactggcacacggtgtctctgttcgacagaaagttc
aaactggtctgctcggagctcaacgggcgctacgtcagcaacgagttcaaagtggaggtg
aatgttatccacacagccagcccagtggaacatgccaatcacattgctgcacagccacag
ttcattcacccagtgcatcattcctttgttgatctctctggtcacaacttggcaaaccct
catcccttttcagttgttcccagcacagccaccgtggtgatcgtggtttgtgtcagcttc
ctggtgttcatgatcatcctgggtgtgttccggatccgagccgcacaccagaggacgatg
cgggaccaggacacgggcaaggagaacgagatggactgggatgactctgctttgaccatc
actgtgaaccccatggagacttacgaggatcaacacagcagtgaagaggaggaggaggaa
gaggaagaagaaagtgaagatggagaagaagatgacatcactagtgcagagtctgaaagc
agtgaggaggaagagggagagcaggaggaggaccaacagaatgttaacagacagcagcag
ctggaatgggatgactctaccctcagttactga
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