Aphelocoma coerulescens (scrub jay): 138121738
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Entry
138121738 CDS
T10543
Symbol
USP39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138121738 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoe03041
]
138121738 (USP39)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
138121738 (USP39)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
138121738
NCBI-ProteinID:
XP_068891632
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Position
22:406463..412166
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AA seq
586 aa
AA seq
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MSSHGRRDRDPRDARGASAASAARGSSRSRRDADAERPRGRRDAERERARRESAEALPVD
LARVKREPGTGTGTGSGVWGGSGTAAPGAPVRVKREREPDGDSDPEPEPAVRYGRFDPED
QRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQL
SHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDGTT
YLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRRIQRPPGDIMFLLVQRFGE
LMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHAALGGTKR
KKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLTLDLPTAP
LYKDEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRFTK
NNFFVEKNPTIVNFPITNVDLREYLSEEVQAAHAHTTYDLIANIVHDGKPSEGSYRIHVL
HHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccacgggaggcgggaccgcgacccccgggacgcccgcggggcctccgccgcc
tccgccgcccggggctcctcccgcagccgccgcgacgccgatgccgagcggccgcggggc
cggcgggacgcggagcgggagcgcgcgcggcgggagtcggcggaggcgctgccggtggat
ctcgcgcgcgtcaagcgggagccgggcaccggcaccggcaccggcagcggcgtctggggg
ggctccggcaccgccgcccccggcgcgcctgtgcgcgtgaagcgggagcgggagccggat
ggagactccgaccctgagcccgagcccgccgtgcgctacgggcgctttgaccccgaggac
cagcgcagccggcactgcccctacctggacaccatcaacaagagtgtcctggactttgac
tttgagaagctctgctccatctccctgtcccacatcaacgtctacgcctgcctcgtctgt
gggaagtacttccagggccgcgggctgaagtcccacgcctacatccacagcgtgcagctg
agccaccacgtgttcctcaacctgcacacgctcaagttctactgcctgcctgacaactac
gagatcatcgactcctcgctcgaggacatcacgtatgtgctcaagcccaccttcacggcc
cagcacatcgcccacctggacaaacaggccaagctgtcccgggcctacgatggtaccacc
tatctgcctggcatcgtggggctcaacaacatcaaggccaatgactatgccaacgctgtg
ctgcaggccctgtccaatgtgcctcccctgcggaattacttcctggaggaggagaactac
cggcgcatccagcgcccgcccggggacatcatgttcctgctggtgcagcgcttcggggag
ctcatgaggaagctctggaatccccggaatttcaaggcgcacgtgtcaccccacgagatg
ctccaggctgtggtgctctgcagcaagaagaacttccagatcaccaagcagggggatggg
gtggagttcctgtcctggttcctgaacgcgctgcacgcggcactgggcggcaccaagagg
aagaagaagaccattgtcaccgatgtgttccagggctccatgcgcatcttcaccaagaag
ctgccacaccctgacctgccggcggaggagaaggcgcagctgctgcagaacagcgagtac
caggagcgcatggtggagtccaccttcctgtacctgaccctggacctgcccacggcgccg
ctctacaaggacgagaaggagcagctcatcatcccccaggtgcccctgttcagcatcctg
gccaagttcaacggtagcactgagaaggagtacaagacctacaaggagaacttcctgaag
cgcttccagctgacgcgcctgcccccctacctcatcttctgcatcaagcgcttcaccaag
aacaacttcttcgtggagaagaaccccaccatcgtcaacttccccatcacgaacgtggac
ctgcgggagtacctgtcggaggaggtgcaggccgcgcacgcccacaccacctacgacctc
atcgccaacatcgtgcacgacgggaagccctcggagggctcctaccgcatccacgtcctg
catcacggcacagggaagtggtacgagctgcaggacctgcaggtgaccgatatcctgccc
cagatgatcaccctgtccgaggcctacatccagatctggaagcgacgcgaggaggatgag
acaaaccaacaaggcgcctga
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