Aphelocoma coerulescens (scrub jay): 138121812
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Entry
138121812 CDS
T10543
Symbol
LSM1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138121812 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138121812 (LSM1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138121812 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
138121812 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
138121812
NCBI-ProteinID:
XP_068891773
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All DBs
Position
22:complement(4659579..4661308)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIQDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQAKQESEKLKVQALKER
GLSVPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacatgcccggcacggccagcctcatccaggacatcgacaagaagcacctggtg
ctgctgcgggacggccggacgctcatcgggtacctgcgcagcatcgaccagttcgcgaac
ttggtgttgcaccagactgtggagcgcatccacgtgggcaagaagtatggggacatccct
cggggcatcttcgtggtgaggggcgagaatgtggtgctgctgggggaaattgacctggag
aaggagagtgacacacctctgcagcaggtgtccatcgaggagatcctggaggagcagcgg
gtggagcagcaggccaagcaggagtcggagaagctgaaggtgcaggcgctgaaggagcgg
ggcctctccgtcccgcgggcggacacgctggatgagtactga
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integrated database retrieval system
