Aphelocoma coerulescens (scrub jay): 138121967
Help
Entry
138121967 CDS
T10543
Symbol
ZC3H12A
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138121967 (ZC3H12A)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
138121967 (ZC3H12A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
138121967
NCBI-ProteinID:
XP_068892103
LinkDB
All DBs
Position
23:complement(4293783..4301823)
Genome browser
AA seq
625 aa
AA seq
DB search
MSAGSVAPGWPEALPAAARPAAGMSGSESPEGPGDGPELQLKVDFFRKLGYSSEEIRVVL
QKLGLGADTNTVLGELVKHGPAERDGPEAPPEPSEAPLVPRGGAGNKSPAPGPEETESDN
LKPIVIDGSNVAMSHGNKEVFSCRGILLAVQWFWDRGHKDITVFVPSWRKEQPRPDVLIT
DQYILRDLEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAHESDGIVVSNDTYRDLQNERP
EWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPVIPEHKKQQCPYGKKCTY
GIKCKFYHPERINQPQRSLADELRANARLSPTRSTSAKEEKKGKRGSQAELLCSVPPESD
KSSLQKVSAERKSLAHKAKASDIPLQAKGCVSGSVSPDRYQQPHMDSLSYISQEHLDSGI
GSLENQLSDMWPHRCTGHCDHSHAEQVAVCTCGRQRPVYPHSPSLEQNGLISYKHGSHKS
SSSGASFLQYGPEMSHSGAPHSLSGYGVPVHPGTAGQYSLPSEFSAALPRSREFWSEPYA
LPQVRSPGVRDPRAVQRAPGPAYGDSGPWASSEQFAEERASVHVKLCGIFHPHLVDAVMS
RFPRLLDPQRLAAEILTYKAQNPGM
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgggcagcgtcgccccgggctggcctgaggcgctgccggccgcggcccggcct
gccgcggggatgagcggcagcgagagccccgaggggcccggggacgggcccgagctgcag
ctaaaggtggatttcttccgcaagctcggctactcctcggaggagatccgcgtcgtgctg
cagaagctgggcctgggcgccgacaccaacacggtgctgggggagctggtgaagcacggc
ccggccgagcgggacggccccgaggctccgcccgagcccagcgaggccccactggtccct
cggggcggcgccggcaataagtccccggcgcccggccccgaagaaacggagagcgacaac
ctgaagcccatcgtcatcgatggcagcaacgtggccatgagccatgggaataaagaagtg
ttctcctgccgaggtatccttctggctgtccagtggttctgggacaggggacacaaggat
attacagtctttgtgccatcatggaggaaggagcagccccgaccagatgtactcataaca
gaccagtacattctgcgtgaccttgagaagaagaagatcctggtgttcacgccatcgcgg
cgggtcgggggcaagcgcgtggtgtgctacgatgaccggttcattgtgaagctggcgcac
gaatccgacggcatcgtcgtgtccaacgacacctaccgggatctgcagaacgagcggccc
gagtggaagaaattcattgaagagcgtctgctgatgtactcctttgttaatgacaagttt
atgcctccagatgatcccttagggcgtcatggccccagcctggataacttcctcaggaag
aaacctgtaattccagaacacaagaaacaacagtgcccttatgggaaaaaatgcacctat
ggaattaagtgtaagttctaccatcctgaaaggatcaaccagccccagcgctcgttagct
gatgagctccgtgccaacgcaaggctgtctccaaccagaagtaccagtgccaaggaggag
aaaaagggcaaaaggggttcccaggcagagctcttgtgctctgtgcccccagagagcgac
aaaagctctttgcagaaggtctctgcagagaggaagagcttggcgcacaaagccaaggcc
agtgacattccgcttcaggccaaaggctgtgtgtcaggcagtgtctcccctgacaggtac
cagcagcctcacatggactctctgtcttacatctctcaggagcatctcgactcaggcatt
gggtctctggagaaccagctgtctgacatgtggcctcacagatgtaccggtcattgtgac
cattcccatgcagagcaggtggctgtctgcacctgcggtaggcagagacctgtctaccca
cattctcccagcttagagcagaatggtctgatctcttacaagcatggctcccataaatct
tcttcctctggtgctagcttcttgcagtatggccctgagatgtctcactcgggggcaccc
cactctctctcaggctatggagtacctgtgcacccaggtactgcggggcagtacagcctg
cccagtgagttcagtgctgccctgccccgctctcgggagttctggtccgagccgtacgcg
ctgcctcaggtgagatcccccggtgtgcgcgacccccgtgcggtgcagagggccccgggg
ccggcgtacggggactcggggccctgggctagctcggagcagtttgctgaggagagggcc
agcgtgcacgtcaagctctgcggcatcttccacccacacctggttgatgctgtgatgagc
cgcttcccccggctgctggacccccagaggttggcagcagagatcctcacctacaaggcc
cagaacccaggtatgtga
DBGET
integrated database retrieval system