Candidatus Accumulibacter cognatus: HWD57_00980
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Entry
HWD57_00980 CDS
T10916
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acog Candidatus Accumulibacter cognatus
Pathway
acog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWD57_00980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acog03019
]
HWD57_00980
Enzymes [BR:
acog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HWD57_00980
Messenger RNA biogenesis [BR:
acog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HWD57_00980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
PqqA
Ins_allergen_rp
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
QLH48519
UniProt:
A0A7D5SB62
LinkDB
All DBs
Position
226220..227686
Genome browser
AA seq
488 aa
AA seq
DB search
MRFDELGLAPELLRALADQGYTGPTPIQAQAIPVILAGRDLMGGAQTGTGKTAAFTLPLL
QRILAFASPSPSPARHPVRVLMLAPTRELAIQVYESVKTYSRHVPIRSCCVFGGVDIKPQ
IAEIRCGAEVLVATPGRLLDLFEQKCLNFASVQALVLDEADRMLDMGFVPDVTRIINLLP
RQRQSLLFSATFSEEIKKLADGMLKSPVLIEVAKRNTVSETITHRVHPVAAEAKRALLVK
LLKSADFNQVLVFTRTKIETNRLARELQKAGIAADSIHGDKSQQERLKALEAFKEGSVLV
LVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAISLVSASEVEYLV
EIEKLIRIQVEQVPVAGFEPEYDYTYPPSGKRGHRRPLPPPPALAPLAAPRSERMTGRNA
QREGANRASNGRFPHLAADGFDFSKPYESPAPLVAAVGNDADRALHHSERPHKPRRPVAA
LLGGLGRK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttgatgaactgggcctggcgcctgaactcctgagagcccttgccgaccagggt
tacaccgggcccacgcccatccaggcacaagcgataccggtgatccttgcgggccgtgat
ctgatggggggggcacaaacgggcaccggcaagacggccgctttcacgctgccgctgctg
caacgtattctggccttcgccagcccgagcccgtcacccgcgcgccatccggtacgggtg
ttgatgctggcgccaacgcgcgaactggcgattcaggtgtacgagtcggtcaagacctac
agcaggcatgttccgatccggagctgttgcgttttcgggggggtcgacatcaagccgcag
atcgccgagatccgctgcggcgccgaggtgctggtggcgacccccggccggctgctcgat
ctcttcgaacaaaagtgcctcaacttcgccagcgtgcaggcactcgtgctcgatgaggcg
gatcgaatgctcgacatgggcttcgtccccgacgtcacgcgcatcatcaacctgctgccc
aggcagcggcagagcctgctgttctcggcgacgttctcggaagagatcaagaagctggcc
gacggcatgctcaagtcgccggtgctgatcgaagtggccaaacgcaacaccgtgtccgag
acgatcacccaccgcgtccacccggtggcggccgaggccaagcgcgcgctgctggtcaaa
ctcctgaagtcggccgatttcaaccaggtgctggtgttcacccgcaccaagatcgaaacc
aatcggcttgcccgcgaactgcaaaaggccgggattgccgccgactcgatccatggcgac
aagagccagcaggagcgcctgaaggcgctcgaagctttcaaggagggttcggtcctggtg
ctggtcgccaccgacgtcgccgcgcgcggcctcgacattgacgaactgccgcacgtcatc
aactttgaactgccgcgcacgccggaggactacatccaccgtatcggccgtacgggtcgc
gcgggcaagccgggaacggccatttcactggtctcggccagtgaggtcgagtatctggtc
gagatcgaaaagctgatccggattcaggtcgagcaggttccggttgctggcttcgaaccc
gaatacgactatacctacccacccagcggcaaacgcggccatcgccgaccactcccgcca
ccgccggcgcttgccccgctggctgccccgcgcagcgagcgcatgacgggccgcaatgcc
cagcgcgaaggagcgaaccgcgccagcaacgggcgtttcccacacctcgccgcagatggc
ttcgacttcagcaagccttatgagagtcctgcgccgcttgtggcagcggtcggcaacgac
gccgatagagcgctgcaccatagcgaacgcccgcacaaaccccgccgtccggtcgcggcg
ctgctgggcggcctggggcgcaagtag
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