Candidatus Accumulibacter cognatus: HWD57_21080
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Entry
HWD57_21080 CDS
T10916
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acog Candidatus Accumulibacter cognatus
Brite
KEGG Orthology (KO) [BR:
acog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acog03016
]
HWD57_21080
Enzymes [BR:
acog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HWD57_21080
Transfer RNA biogenesis [BR:
acog03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HWD57_21080
Prokaryotic type
tRNA splicing ligases
HWD57_21080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLH51989
UniProt:
A0A7D5NH74
LinkDB
All DBs
Position
complement(4655730..4656947)
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AA seq
405 aa
AA seq
DB search
MDYQLLEVENGKPIKMWTQDVPVEDEARKQLIDTARMPFIYRHLAVMPDVHLGKGSTIGS
VIPTQGAIIPAAVGVDIGCGMMAACTTLLATDLPDNLLALRTAIERAVPHGRTMGRGRRD
EGSWDTPPASVDAMWAGLIEGFTRITDRHPCLKNTNNHKHLGTLGTGNHFIEVCLDEADR
VWFMLHSGSRGVGNAIGSHFIKLAQKDMQQHISHLPNRDLAYFEEGSQHFNEYVEAVGWA
QDFARRNRLLMMQNVIAATRGVIAKPFGASVEAVNCHHNYVQRETHFGAEVLVTRKGAVS
AQKGELGIIPGSMGAKSFIVRGLGNKESFCSCSHGAGRTMSRNEARRRFTVADQERATAH
VECRKDADVIDEIPMAYKDIDAVMHAQRELVEVVHTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggactatcaactcctcgaagtcgaaaacggcaaaccgatcaagatgtggacgcaagac
gttccggttgaggacgaagcccgcaagcagttgatcgacaccgccagaatgcccttcatc
tatcggcacctggcggtgatgccagatgtacacctgggcaagggttcgacgatcggcagc
gtcatcccgacgcagggtgcgatcatcccggctgccgtcggtgtcgatatcggctgcggc
atgatggccgcgtgcacgacgctgctggcgaccgatttgccggacaatctgctggcgctg
cgtacggccattgagcgcgccgtgccgcacgggcgaacgatgggccggggccggcgcgac
gaagggtcatgggatacgccaccggcaagtgtcgatgccatgtgggctggtttgatcgaa
ggctttacacgcatcaccgaccggcatccttgtctcaagaacaccaacaaccacaagcac
ctcggcacgcttggtaccggcaaccacttcatcgaagtctgtctcgacgaagcggatcgc
gtctggttcatgctgcattccggttcgcgcggcgtcggtaatgccatcggtagccacttc
atcaaactggcacagaaggatatgcagcagcacatctcccatctgccgaatcgtgacctc
gcctattttgaggagggaagccagcacttcaacgaatacgtcgaagctgtcggctgggcg
caggattttgcgcggcgaaatcgtctgctgatgatgcagaacgtcattgcggctacgcgt
ggcgtgattgccaaaccgtttggcgccagcgtcgaggccgtaaactgccaccacaactac
gtccagcgcgagactcactttggtgcggaagtattggtcacccgcaagggggcggtctcg
gcacagaaaggcgaactcggcatcattccgggttcgatgggcgccaagagtttcatcgtg
cgcggcctgggcaacaaggaatcgttttgctcctgcagtcacggcgccggacgaacaatg
agccggaacgaagcccgacgccgcttcaccgttgccgaccaggagcgcgccaccgcccac
gtcgagtgccggaaggatgccgatgtgatcgatgaaatcccgatggcctacaaggatatc
gatgcggtgatgcacgcgcagcgcgaactcgtggaggtggtacatactctgcgccaggtg
gtgtgcgtcaagggttga
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