Anaerotruncus colihominis: K5I23_04385
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Entry
K5I23_04385 CDS
T08068
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
acol
Anaerotruncus colihominis
Pathway
acol02020
Two-component system
acol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acol00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K5I23_04385 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K5I23_04385 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acol03021
]
K5I23_04385 (rpoN)
Transcription machinery [BR:
acol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K5I23_04385 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
RCR
HTH_Crp_2
HTH_38
Motif
Other DBs
NCBI-ProteinID:
UOX66480
LinkDB
All DBs
Position
complement(895511..896854)
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AA seq
447 aa
AA seq
DB search
MELGVRLEQNQILAPRMEQSVRILQMDSVQLGEYLKELALENPVAEVEPPPQREQKEKLA
QRKLEWLENQTRREQENMGYYDDDGDLTPEQNTPAPQDESLTDHLLAQVESAAVPRALAA
AARYVIGCLDDNGYLKADPEQMRAKAGACDALLERAIALVQSFDPPGVGARDLAECLCLQ
IPASDALARRLARDFLPEIAKKRVGVLAAKTGASAGEVEAAVARIRRLNPKPGALYGAHV
VAHYITPDIVVTSFGDHYNVMLCEFAYPQVRLSDSYLQIARETADPEVIKYIGEKIDQVN
WVIKCIENRNRTLVEVARAIVRQQERFFRYGPQHLGVLRMREIAGLVGLHESTVSRAVRG
KYLQCAHGVYPLRYFFVKGPEHGGAVSSEAVKYKLRALIDAEDRAHPLSDRALCELLAAD
GVSISRRTVAKYRGEMGVPGASGRVRG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggagctgggcgtcagactggaacagaatcagatattggcgccgcgtatggagcaatct
gtgcggattttgcagatggacagcgtacagcttggggaatacctcaaggagctggcgctt
gaaaatccggtcgcggaggtggaaccgccgccacagcgcgagcaaaaggaaaagctggcg
cagcgaaagctggaatggctggaaaatcagacgcgccgcgaacaggagaatatgggatat
tatgacgacgacggcgacctgacgccggagcagaacacacccgcgccgcaggatgaaagt
ctgacggaccacctgttggcgcaggtggaatcagcagccgtgccaagggcgctggccgcg
gcggcccggtatgtgatcggctgtctcgacgataacggctatctaaaagcagatcccgaa
cagatgcgtgccaaagccggggcgtgtgacgcgctgctcgaacgggcaatcgcgctggta
cagagctttgacccgccgggcgttggcgcgcgcgatctggcggaatgcctctgcttgcag
ataccagcttccgatgcgctcgcgcgccggctggcgcgggactttttgcctgagatcgcc
aaaaaacgtgtgggcgtcctggcggcgaaaaccggcgcgtctgccggggaggtggaagcg
gctgtcgcgcgcatccgccggcttaatccgaagcccggcgcgctttatggagcgcatgtc
gttgcgcattacatcacgcccgatattgtggtcacaagcttcggggaccattacaatgtg
atgctgtgcgaatttgcctatccgcaggtgcgcctttcagacagctatctgcaaatagcg
cgcgagacggctgatcctgaggttatcaaatacatcggcgaaaagatcgatcaagtcaat
tgggtgatcaaatgcattgaaaaccgaaataggacgcttgtggaagtggcgcgggcgatc
gtgcggcagcaggagcgtttttttcgctatgggccgcagcatctcggcgtcctgcgcatg
cgtgagattgccgggctggtcggcctgcatgaatcgacggtcagccgtgctgtgcgcgga
aagtatcttcaatgcgcgcacggcgtctatccgttgcgttatttctttgtcaaaggtccg
gagcacggcggggcggtcagctccgaggcagttaaatataaactgcgcgcgctcattgat
gctgaggaccgggcgcatccgctcagcgaccgtgcgctctgtgagcttctggcggccgac
ggcgtcagcatatcgcgccgcaccgtcgcgaaataccgtggggagatgggtgtgcccggc
gcgtccggcagggtccgcggctga
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