Anaerotruncus colihominis: K5I23_12005
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Entry
K5I23_12005 CDS
T08068
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acol
Anaerotruncus colihominis
Pathway
acol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5I23_12005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acol03019
]
K5I23_12005
Messenger RNA biogenesis [BR:
acol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K5I23_12005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
UOX64710
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Position
2432875..2435019
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AA seq
714 aa
AA seq
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MTDDKKVGGKLTEEQLSMGVEALEKRSVVERAAPRKKKTRQPVKETAARLLQKVTPEQAE
ETSAKPAAKKSASRAEKPAKKEPQKRDAAKKEPARKEPAKKEPSVKKENGEPRQPKRGRK
PSPKASAPIGATIELSEAGKARQEKAARPAGRAKKSRVKEQRKTPVRIIPLGGLLEVGKN
ITVYECMNDMFIVDCGMTFPDENMLGVDLVLPDFTYVQKNRDKLRGIVITHGHEDHIGAL
PYFLKQINVPVYATRLTLGLIENKLREHGLYGKVKLVQIAPRETIKLGCMEVEFIRVNHS
IPDAVALAIHTPAGVIIQTGDFKIDYTPIIGDIIDLARFGELGGQGVLALLSDSTNAERP
GFTPTEVTVADSFDKLFKQAGHKRIIIATFSSNIHRMQLICEAAAKHGRKVAVSGRSMIN
AVAVSTELGYLKPPNGVMIDIDDINRYRPEDIVLITTGSQGEPMSALSRMASNDHRKVTV
TPDDFIIISATPIPGNEKTVGRVVNELMRLGADVIYERMYEVHVSGHACQEELKIMLALT
KPKFFFPVHGEYKQLKRHASLGLAMGIPTENIFIGENGHVFELDGVSVKTGEIVPSGRVL
VDGLGVGDVGSIVLRDRKHLGEDGLIVVVTTIDGTSGEIVAGPDIISRGFVYVREAEDML
SEARAIAKQTVQDCVGGRMRDWGNIKTQVRDALSSYFYGRTKRSPMILPVIQEV
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatgataagaaggtcggcggaaagctgacagaggagcagctcagtatgggtgtg
gaggcgcttgaaaagcgttccgtggtggagcgcgccgcgccgcgaaagaaaaagacccgc
cagccggtcaaggaaacggctgccaggctgctccagaaggtaacgccggaacaggctgag
gagacgtccgccaagccggcggcaaaaaagagcgcatcccgtgcggagaagccggccaag
aaggaaccgcagaagcgggatgcggcaaagaaagagccggcccgcaaggagccggccaag
aaggagccgtctgttaaaaaggaaaacggcgagccgcgtcagccaaagcgtgggcgcaag
ccatccccaaaggcgtccgccccgatcggcgcgacgatcgagctttccgaagcgggaaag
gcccgccaggagaaagcggcgcgcccggccgggcgcgccaagaaaagccgtgtaaaggag
cagcgtaagacgccggtgcgcatcattccgctcggcggtctgttggaggttggtaagaac
atcaccgtttacgaatgcatgaacgatatgttcatcgtcgactgcggcatgacctttccg
gatgaaaatatgctcggcgtcgatctggtgttgccggatttcacgtatgtacagaagaat
cgcgacaagctgcgcggcatcgtgatcacacacggccatgaggaccatatcggcgcgctg
ccgtactttttaaaacagatcaacgttccggtctacgcgacgcgccttacgctcgggctg
atcgagaacaagctgcgggagcacggcctttatgggaaggtcaagctggtgcagatcgca
ccgcgtgagacgattaagctcggctgcatggaggttgaatttatccgcgtcaaccactct
atccccgacgcggtcgcgctggcgatccacacgccggccggcgtcattatccagacgggc
gactttaaaatcgactacacgccgattataggcgatattatcgatctggcgcgttttggc
gagcttggcgggcagggcgtactggcgcttctgtccgactccaccaatgcggagcggccc
ggctttaccccgacagaggtcacggtcgcggacagcttcgacaagctctttaagcaggcc
ggacacaagcgtatcatcatcgcgacattctcctcgaatatccatcggatgcagctcatc
tgcgaagcagccgcgaagcacgggcgcaaggtcgccgtttccggacgcagtatgatcaac
gcggttgccgtttcaacggagcttgggtatctcaagccgcccaacggcgttatgatcgat
atcgatgatatcaaccgctaccgccccgaagatatcgtgctgatcacgacgggcagccag
ggggagccgatgagcgcgctttcgcgcatggcgtcgaacgatcaccgcaaggtgacggtt
acgcccgacgatttcattatcatcagcgcgacgccgatccccggaaatgaaaagacggtc
ggacgcgtcgtcaatgagctgatgcgccttggcgcggacgtgatttatgagcgtatgtac
gaggtgcatgtatcgggccacgcctgccaggaggaactgaagatcatgctggcgctgaca
aagccgaaattctttttcccggtgcacggcgaatacaagcagctcaaacgtcatgcgtcg
ctcggccttgcgatgggcatcccgacggagaatatctttatcggtgaaaacggccatgtg
tttgagcttgacggcgtttccgtcaaaacaggcgagatcgtgccgtcgggccgcgtgctg
gtcgacgggcttggcgtcggcgacgtcggcagcattgtgctgcgcgaccgcaagcatctc
ggcgaggacggtttaatcgtcgtcgtaacaacgatcgacgggaccagcggcgaaatcgtg
gcaggaccggatattatttcgcgcgggttcgtctatgtgcgcgaggcggaggatatgctt
tcagaggcgcgtgccatcgcaaagcagacggttcaggactgcgtgggcggccgtatgcgc
gattggggcaacatcaaaacgcaggtacgcgacgctctgtcgtcctatttttacggacgc
accaagcgcagcccgatgatcctgcctgtgatccaggaggtttga
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