Anaerotruncus colihominis: K5I23_13310
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Entry
K5I23_13310 CDS
T08068
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acol
Anaerotruncus colihominis
Brite
KEGG Orthology (KO) [BR:
acol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acol03016
]
K5I23_13310
Enzymes [BR:
acol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K5I23_13310
Transfer RNA biogenesis [BR:
acol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K5I23_13310
Prokaryotic type
tRNA splicing ligases
K5I23_13310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOX64958
LinkDB
All DBs
Position
2682838..2684043
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AA seq
401 aa
AA seq
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MLEVKGKYNSAKIFTDVVDKASVAQVIELCNQPFTAKSRIRMMPDIHAGAGCTVGTTMTI
TDKVVPNLVGVDIGCGMETVHLREQHLELQKLDKLIRAKIPSGFSIREKAHRYFDEIDLT
ELYCYRQINPLRAEKSLGTLGGGNHFIEVDRDDEGGLYLVIHSGSRHLGLEVAAWYQNEA
YQRLNKSSKSDEAALIAKLKSEGRDKEIQKAIRKLKNTKQTSIPKPLAYAEGELFEQYIH
DMRIIQRFAVLNRRAIADDILKGMGLHAQDSFTTIHNYIDTDAMVLRKGAVSAKAGERLL
IPINMRDGSLICIGRGNEDWNCSAPHGAGRLMSRSQAKQSFTVSEFKHQMDGIYTTSVGK
ATLDECPMAYKRMEDIVSNIGETVRIERIIRPVYNFKAGEE
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggttaaaggaaaatacaacagcgcaaagatttttaccgatgtggttgacaaa
gcatcggtcgcgcaggtgattgagctgtgcaaccagccttttacagccaaaagccgcatc
cgcatgatgcccgatattcatgcgggcgcggggtgcactgtcgggacaaccatgacgatt
accgacaaggtcgtgccaaatcttgtgggtgtcgacattggatgtgggatggaaacggtg
catctgcgggaacaacatttggagcttcaaaagctcgataaactgattagagcgaaaatt
ccatcgggattttctatccgcgaaaaggcgcaccgttattttgatgaaatcgacctgacg
gagctttactgttaccgccagatcaacccgctgcgtgcggagaaaagccttgggacgctc
ggtggtggcaatcattttattgaggtggaccgcgatgatgaaggcggcttgtatcttgtg
atccattcaggcagccggcacttggggctggaggttgcggcctggtatcagaacgaggct
taccaaaggctcaataaaagcagcaaatccgatgaggccgccctaatcgcaaagcttaaa
tcagaggggcgcgataaggaaattcaaaaggcgatcaggaagctgaaaaatacaaaacag
acgtcgatcccaaagccgctggcctatgctgaaggtgagttgtttgaacagtatatccat
gacatgcgaattatccagcgatttgctgtgctcaaccgccgtgcaatagccgacgatatt
ctgaaggggatggggctgcacgcacaggatagttttacgacgattcacaattatattgat
accgatgcaatggtactccgcaaaggagctgtttccgcaaaggctggcgaacgcctgctg
atcccaatcaatatgcgcgacggcagcctgatctgtatcggacgcggcaatgaggattgg
aattgttccgcgccgcacggcgcgggcaggctgatgagccggtcacaggcaaaacaaagc
ttcacggtatcagagtttaagcatcaaatggatggaatttatacaacctctgtcggaaaa
gcgacgttggatgaatgcccgatggcttataagcgcatggaggatattgtgtccaatatt
ggtgaaacggttcgtatcgaacggattatccgcccggtttataattttaaagcgggggag
gaataa
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